PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_14999_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

GeBP

Protein Properties

Length: 422aa MW: 46717.7 Da PI: 4.3997

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_14999_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	107.2	1.3e-33	128	231	2	97
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgk........spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgk 76 lfqrlw++eDei lLqG++d+++ + + + ++d+ fy+++k++++++++k+qlveK+rrLKkK+++ +k+ sgk Cotton_A_14999_BGI-A2_v1.0 128 LFQRLWTDEDEIELLQGFLDYTMLKTSsnpsstshHHHHDTALFYDQIKSKLQLDFNKNQLVEKLRRLKKKYRNVISKICSGK 210 79*****************886655455554434456999************************************* PP DUF573 77 epsfskehdqkifelskkiWg 97 e+sf+++hdq +fe+s++iW Cotton_A_14999_BGI-A2_v1.0 211 EFSFKSPHDQATFEISRRIWS 231 ******************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	1.3E-31	129	231	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 422 aa Download sequence Send to blast
MASEQYGGVF EVSQDDDEEP SSSDNEVDEN DDVLNVNEDV LNDEDDEVLL EEEEDINSPS 60 LLPQPIPSQV SFASVPAVPL AVPSASAVTI AAISTDELPP DSKRQRVDSV VPEKKTPPPQ 120 QLDDSRRLFQ RLWTDEDEIE LLQGFLDYTM LKTSSNPSST SHHHHHDTAL FYDQIKSKLQ 180 LDFNKNQLVE KLRRLKKKYR NVISKICSGK EFSFKSPHDQ ATFEISRRIW SDGVSKVEDN 240 VLDDDENNNN NNASLIDESG EKKNLTQKPA ATKKRSRNKG VKMEEKRDVN DGIVHIDSNS 300 NDRVNNDNGN VEALGVGSSG GGANTGVAGV IEETVRSCVT PLFKELLGSV MVGGWGYGGR 360 GISGLVMNAM PLCLGGGGGN GEWMDERWRK LQIMELEVYS KRVELVQDEI KAALEELRSM 420 NG

Sequence ? help Back to Top

Protein Sequence Length: 422 aa Download sequence Send to blast

MASEQYGGVF EVSQDDDEEP SSSDNEVDEN DDVLNVNEDV LNDEDDEVLL EEEEDINSPS  60
LLPQPIPSQV SFASVPAVPL AVPSASAVTI AAISTDELPP DSKRQRVDSV VPEKKTPPPQ  120
QLDDSRRLFQ RLWTDEDEIE LLQGFLDYTM LKTSSNPSST SHHHHHDTAL FYDQIKSKLQ  180
LDFNKNQLVE KLRRLKKKYR NVISKICSGK EFSFKSPHDQ ATFEISRRIW SDGVSKVEDN  240
VLDDDENNNN NNASLIDESG EKKNLTQKPA ATKKRSRNKG VKMEEKRDVN DGIVHIDSNS  300
NDRVNNDNGN VEALGVGSSG GGANTGVAGV IEETVRSCVT PLFKELLGSV MVGGWGYGGR  360
GISGLVMNAM PLCLGGGGGN GEWMDERWRK LQIMELEVYS KRVELVQDEI KAALEELRSM  420
NG

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017631565.1	0.0	PREDICTED: mediator-associated protein 1
TrEMBL	A0A2P5WWW3	0.0	A0A2P5WWW3_GOSBA; Uncharacterized protein
STRING	Gorai.007G285700.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3098	27	64

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28040.1	1e-61	DNA-binding storekeeper protein-related transcriptional regulator