PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_14981_BGI-A2_v1.0 | ||||||||
Common Name | F383_18307 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | CPP | ||||||||
Protein Properties | Length: 700aa MW: 76927.8 Da PI: 7.1584 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 47.8 | 2.9e-15 | 416 | 454 | 2 | 40 |
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 ++k+CnCk+skClk+YC+Cfaag +C e C+C dC+Nk Cotton_A_14981_BGI-A2_v1.0 416 SCKRCNCKRSKCLKLYCDCFAAGLYCIEPCSCLDCFNKP 454 689**********************************96 PP | |||||||
2 | TCR | 53.4 | 5e-17 | 501 | 540 | 1 | 40 |
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 ++k+gCnC+ks+ClkkYCeCf+ag+ Cs +C+Ce+CkN+ Cotton_A_14981_BGI-A2_v1.0 501 RHKRGCNCRKSSCLKKYCECFQAGVGCSPSCRCEGCKNSF 540 589***********************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01114 | 3.5E-18 | 415 | 456 | IPR033467 | Tesmin/TSO1-like CXC domain |
PROSITE profile | PS51634 | 36.385 | 416 | 541 | IPR005172 | CRC domain |
Pfam | PF03638 | 6.6E-11 | 418 | 453 | IPR005172 | CRC domain |
SMART | SM01114 | 3.8E-17 | 501 | 542 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 1.2E-12 | 503 | 539 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 700 aa Download sequence Send to blast |
MDTPHKTQIT PTPTSSLSKF EDSPVFKYID SLSPIEQAKS SQTDNAFNSL AFLSPSSLFP 60 SPQINCHRES RFSVKRHHFS ADLNTRVLQS SNESNASQEA SKAAGQSGLY DEHPGCLSND 120 GSSKGISSDL FDKQSDLAVE LPGTSKYDCR SPDDNLEACD ALLKKTSLEV VEQERSPFQR 180 SRDEWKERQR SFENERDLRK IRRIKPSEEA AGCGWVAVVS DVADMLTVNT SIIHENSDGQ 240 DQRTVDSGTT SFISNIPEFS LDNANNLENA ESGDHQGSCK QNELGDSVTD QTSCILSTCL 300 PDKPVVTDSS LKKDDKGEKC SQLSRQRSIR RRCLVFEKSP GFGLHLNSLP NILKGGQNPP 360 NKSILSSMKM GEVPSDNGTV VIESSCEAPA SIGGTDADHN TPEKKRHFEL VEESASCKRC 420 NCKRSKCLKL YCDCFAAGLY CIEPCSCLDC FNKPIHEKMV LETRKQIESR NPQAFAPKVI 480 RSTDSVLDTW GENNKTPASA RHKRGCNCRK SSCLKKYCEC FQAGVGCSPS CRCEGCKNSF 540 GRKDGCDESG SDGEGLEACE KNASDKNSHD IVTHKNAEEH RDLPVPSNIS RLPLAYSGKF 600 TGSFPHSIRS SSQLCNTPEH GSSESSLCQS KFNSNLQAIP EDETPKVLKH KCLPLILKTN 660 SPPNSKRVSP PHHECSSSTA QRSRKLILKS IPSFPSFCPP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5fd3_A | 3e-18 | 418 | 538 | 12 | 120 | Protein lin-54 homolog |
5fd3_B | 3e-18 | 418 | 538 | 12 | 120 | Protein lin-54 homolog |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017627857.1 | 0.0 | PREDICTED: protein tesmin/TSO1-like CXC 2 isoform X1 | ||||
TrEMBL | A0A0B0MKM1 | 0.0 | A0A0B0MKM1_GOSAR; Uncharacterized protein | ||||
STRING | Gorai.007G284200.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM17096 | 5 | 10 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G14770.1 | 1e-70 | TESMIN/TSO1-like CXC 2 |