PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_14981_BGI-A2_v1.0
Common NameF383_18307
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family CPP
Protein Properties Length: 700aa    MW: 76927.8 Da    PI: 7.1584
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_14981_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR47.82.9e-15416454240
                         TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                                 ++k+CnCk+skClk+YC+Cfaag +C e C+C dC+Nk 
  Cotton_A_14981_BGI-A2_v1.0 416 SCKRCNCKRSKCLKLYCDCFAAGLYCIEPCSCLDCFNKP 454
                                 689**********************************96 PP

2TCR53.45e-17501540140
                         TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                                 ++k+gCnC+ks+ClkkYCeCf+ag+ Cs +C+Ce+CkN+ 
  Cotton_A_14981_BGI-A2_v1.0 501 RHKRGCNCRKSSCLKKYCECFQAGVGCSPSCRCEGCKNSF 540
                                 589***********************************85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011143.5E-18415456IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163436.385416541IPR005172CRC domain
PfamPF036386.6E-11418453IPR005172CRC domain
SMARTSM011143.8E-17501542IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.2E-12503539IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 700 aa     Download sequence    Send to blast
MDTPHKTQIT PTPTSSLSKF EDSPVFKYID SLSPIEQAKS SQTDNAFNSL AFLSPSSLFP  60
SPQINCHRES RFSVKRHHFS ADLNTRVLQS SNESNASQEA SKAAGQSGLY DEHPGCLSND  120
GSSKGISSDL FDKQSDLAVE LPGTSKYDCR SPDDNLEACD ALLKKTSLEV VEQERSPFQR  180
SRDEWKERQR SFENERDLRK IRRIKPSEEA AGCGWVAVVS DVADMLTVNT SIIHENSDGQ  240
DQRTVDSGTT SFISNIPEFS LDNANNLENA ESGDHQGSCK QNELGDSVTD QTSCILSTCL  300
PDKPVVTDSS LKKDDKGEKC SQLSRQRSIR RRCLVFEKSP GFGLHLNSLP NILKGGQNPP  360
NKSILSSMKM GEVPSDNGTV VIESSCEAPA SIGGTDADHN TPEKKRHFEL VEESASCKRC  420
NCKRSKCLKL YCDCFAAGLY CIEPCSCLDC FNKPIHEKMV LETRKQIESR NPQAFAPKVI  480
RSTDSVLDTW GENNKTPASA RHKRGCNCRK SSCLKKYCEC FQAGVGCSPS CRCEGCKNSF  540
GRKDGCDESG SDGEGLEACE KNASDKNSHD IVTHKNAEEH RDLPVPSNIS RLPLAYSGKF  600
TGSFPHSIRS SSQLCNTPEH GSSESSLCQS KFNSNLQAIP EDETPKVLKH KCLPLILKTN  660
SPPNSKRVSP PHHECSSSTA QRSRKLILKS IPSFPSFCPP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A3e-1841853812120Protein lin-54 homolog
5fd3_B3e-1841853812120Protein lin-54 homolog
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017627857.10.0PREDICTED: protein tesmin/TSO1-like CXC 2 isoform X1
TrEMBLA0A0B0MKM10.0A0A0B0MKM1_GOSAR; Uncharacterized protein
STRINGGorai.007G284200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17096510
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14770.11e-70TESMIN/TSO1-like CXC 2