PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_14958_BGI-A2_v1.0
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 300aa    MW: 33952.3 Da    PI: 7.5951
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_14958_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.13.6e-171461148
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
             Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                +g+WT+eEd++l+++++ +G g+W+  ++  g+ R++k+c++rw +yl
  Cotton_A_14958_BGI-A2_v1.0 14 KGPWTPEEDLKLINYIQIHGAGHWRNLPKNAGLQRCGKSCRLRWTNYL 61
                                79********************************************97 PP

2Myb_DNA-binding50.25.8e-1667111147
                                 TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
             Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                 rgr++ eE+e +++++  lG++ W++Ia +++ gRt++++k++w+++
  Cotton_A_14958_BGI-A2_v1.0  67 RGRFSFEEEETIIQLHSVLGNK-WSAIACRLP-GRTDNEIKNYWNTH 111
                                 89********************.*********.************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.2E-25764IPR009057Homeodomain-like
PROSITE profilePS5129425.262965IPR017930Myb domain
SuperFamilySSF466893.04E-3011108IPR009057Homeodomain-like
SMARTSM007171.1E-131363IPR001005SANT/Myb domain
PfamPF002491.8E-151461IPR001005SANT/Myb domain
CDDcd001674.04E-121661No hitNo description
Gene3DG3DSA:1.10.10.601.2E-2565116IPR009057Homeodomain-like
SMARTSM007172.9E-1466114IPR001005SANT/Myb domain
PROSITE profilePS5129419.18866116IPR017930Myb domain
PfamPF002492.7E-1467111IPR001005SANT/Myb domain
CDDcd001677.08E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MGRTPGCDKN GLKKGPWTPE EDLKLINYIQ IHGAGHWRNL PKNAGLQRCG KSCRLRWTNY  60
LRPDIKRGRF SFEEEETIIQ LHSVLGNKWS AIACRLPGRT DNEIKNYWNT HIRKRLARNG  120
IDPVTHAQRL DLVDLSSSII SSLLGVQALL NPQLLSLANT LLSLKQENPE LLLQYLQQNQ  180
LLQTPTLEPL SQLLQAPMTD CSDQNSQKSN VLVSQPNYEH SNPNPTVPSL VSDNSDFHSM  240
DGSQNFGLDS VRFTPISSPT PLHSSSTFIN NSYTTHYEIE RFNSLLKYEI PESLNINDLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-271211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function in osmotic stress and wounding signaling pathways (Probable). Contributes to basal resistance against the herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:19517001, ECO:0000305|PubMed:12857823}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by light (PubMed:8980549). Induced by wounding, salt stress and abscisic acid (PubMed:12857823). Induced by the lepidopteran herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:12857823, ECO:0000269|PubMed:19517001, ECO:0000269|PubMed:8980549}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016739556.10.0PREDICTED: transcription factor MYB23-like
RefseqXP_017613905.10.0PREDICTED: transcription factor MYB23-like
SwissprotQ9LDR84e-88MY102_ARATH; Transcription factor MYB102
TrEMBLA0A1U8NKM50.0A0A1U8NKM5_GOSHI; transcription factor MYB23-like
STRINGGorai.012G132200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28110.16e-82myb domain protein 41
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Huang KC,Lin WC,Cheng WH
    Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
    BMC Plant Biol., 2018. 18(1): p. 40
    [PMID:29490615]
  4. Zhu L,Guo J,Ma Z,Wang J,Zhou C
    Arabidopsis Transcription Factor MYB102 Increases Plant Susceptibility to Aphids by Substantial Activation of Ethylene Biosynthesis.
    Biomolecules, 2019.
    [PMID:29880735]