PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_14938_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 340aa    MW: 38903.4 Da    PI: 6.6828
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_14938_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.21e-18140189255
                         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                  y+GVr++  +g+WvAeIr p+e   r+r +lg+f+tae+Aa a+++ + kl+g
  Cotton_A_14938_BGI-A2_v1.0 140 LYRGVRQRQ-WGKWVAEIRLPRE---RTRLWLGTFDTAEDAALAYDRKAFKLRG 189
                                 59****999.**********976...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.39E-33139199No hitNo description
Gene3DG3DSA:3.30.730.109.6E-32140198IPR001471AP2/ERF domain
PROSITE profilePS5103223.156140197IPR001471AP2/ERF domain
SMARTSM003803.0E-37140203IPR001471AP2/ERF domain
SuperFamilySSF541711.44E-22140198IPR016177DNA-binding domain
PRINTSPR003675.0E-11141152IPR001471AP2/ERF domain
PfamPF008474.9E-12141189IPR001471AP2/ERF domain
PRINTSPR003675.0E-11163179IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
EIAKGKGVDF GVEVELERQQ WKPVFDEASI SQRPLKKIRS PHHQHHHLVH SSVSYPSLPS  60
SRLVFPFAFD GSFYPISRPW QPQNQQHMIS FSPQPQQQQQ QQQQQQQLLQ YCSGALNLSP  120
RGGMMGRLGQ PVQPIHTSKL YRGVRQRQWG KWVAEIRLPR ERTRLWLGTF DTAEDAALAY  180
DRKAFKLRGK NARLNFPELF FNKDKDTSPS SPQPNQNQNL PKQEHESPKL QSANMESMSQ  240
GDNPGSEPTT IDMVQMTAEE GDSGSQASMW EDMALAEAWF NAFPEEWGPV NPVWDDIDAA  300
NNLLLPSNLS FTNQNQQDKE FDHQKQQDSS STSCPMKLFF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A9e-21139197160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A1e-20139197463ATERF1
3gcc_A1e-20139197463ATERF1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU5323104e-70EU532310.1 Gossypium barbadense clone I11-12 ISSR marker genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017613908.10.0PREDICTED: ethylene-responsive transcription factor ERF054-like
TrEMBLA0A0D2V4T10.0A0A0D2V4T1_GOSRA; Uncharacterized protein
STRINGGorai.012G130600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21412775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28140.13e-53ERF family protein