PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_14899_BGI-A2_v1.0
Common NameF383_26602
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HSF
Protein Properties Length: 322aa    MW: 36814.3 Da    PI: 7.7517
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_14899_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind115.72.8e-36221142103
                                 HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEES CS
                HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhk 84 
                                 Fl+k+y++++d+++++++sw e+ ++fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+k+  ++         weF+++
  Cotton_A_14899_BGI-A2_v1.0  22 FLTKTYQLVDDPTTDHIVSWGEDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDR---------WEFANE 95 
                                 9*****************************************************************99.........****** PP

                                 XXXXXXXXXXXXXXXXXXX CS
                HSF_DNA-bind  85 sFkkgkkellekikrkkse 103
                                 +Fkkg+k+ll++i+r+k++
  Cotton_A_14899_BGI-A2_v1.0  96 YFKKGEKHLLCEIHRRKTA 114
                                 ****************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.7E-3814106IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004156.0E-6118111IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.36E-3419111IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004474.7E-3222111IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.2E-202245IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.2E-206072IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406185IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.2E-207385IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MLDNCEGILL SLDSHKPVPA PFLTKTYQLV DDPTTDHIVS WGEDDTTFVV WRPPEFARDL  60
LPNYFKHNNF SSFVRQLNTY GFRKIVPDRW EFANEYFKKG EKHLLCEIHR RKTAQPQVTA  120
ALNHYNHHHR HLHTQSPMVN NTHYGYFPFP SRVSISPPDS DEQTTNWCDS PPLSSTTGGG  180
GSYNNSSVTA LSEDNERLRR SNNLLISELA HMKKLYNDII YFVQNHVKPV TPSNSYSPSL  240
LLCSPNQHHF GYYPNSPTPQ VQVLNEEPNN KKTKLFGVPL QSKKRLHPEY GGSTAANMET  300
HKPRLVLEKD DIGLNLMPSS TC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A7e-221811417123Heat shock factor protein 1
5d5u_B8e-221811326131Heat shock factor protein 1
5d5v_B8e-221811326131Heat shock factor protein 1
5d5v_D8e-221811326131Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR0674110.0KR067411.1 Gossypium hirsutum HSF30 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017644806.10.0PREDICTED: heat stress transcription factor B-4-like
SwissprotQ9C6351e-108HSFB4_ARATH; Heat stress transcription factor B-4
TrEMBLA0A0B0MRZ20.0A0A0B0MRZ2_GOSAR; Heat stress transcription factor B-4-like protein
STRINGGorai.010G020700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29002866
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.11e-108heat shock transcription factor B4