PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_14881_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 156aa    MW: 17435.6 Da    PI: 10.0625
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_14881_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.91e-173079255
                         AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                                 y+G+r +k +g+WvAeIr+p   +kr r++lg++ t+  Aa+a++ a  +l+g
  Cotton_A_14881_BGI-A2_v1.0 30 PYRGIRMRK-WGKWVAEIREP---NKRSRIWLGSYTTPVAAARAYDTAVFYLRG 79
                                69*****99.**********9...336*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.47E-213088IPR016177DNA-binding domain
PROSITE profilePS5103222.1283087IPR001471AP2/ERF domain
SMARTSM003807.3E-363093IPR001471AP2/ERF domain
PfamPF008471.0E-103179IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.5E-303188IPR001471AP2/ERF domain
PRINTSPR003677.0E-123142IPR001471AP2/ERF domain
CDDcd000182.92E-273189No hitNo description
PRINTSPR003677.0E-126989IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 156 aa     Download sequence    Send to blast
MEGDCCSSST SSSTSGEKPK AERTQQKEKP YRGIRMRKWG KWVAEIREPN KRSRIWLGSY  60
TTPVAAARAY DTAVFYLRGP SARLNFPDLI EKDNKLRDIS AASIRKKAAE VGAKVDALQT  120
SSVYHHGGSS SDSPNNTRRV LLKPDLNKYP EISDED
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-162787263ATERF1
3gcc_A6e-162787263ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00188DAPTransfer from AT1G46768Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016722026.11e-112PREDICTED: ethylene-responsive transcription factor RAP2-1-like isoform X2
RefseqXP_017644760.11e-112PREDICTED: ethylene-responsive transcription factor RAP2-1-like isoform X2
SwissprotO221742e-49ERF08_ARATH; Ethylene-responsive transcription factor ERF008
TrEMBLA0A1U8M5D31e-111A0A1U8M5D3_GOSHI; ethylene-responsive transcription factor RAP2-1-like isoform X2
STRINGGorai.010G021900.11e-109(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23340.12e-51DREB and EAR motif protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Sazegari S,Niazi A,Ahmadi FS
    A study on the regulatory network with promoter analysis for Arabidopsis DREB-genes.
    Bioinformation, 2015. 11(2): p. 101-6
    [PMID:25848171]