PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_14866_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 273aa    MW: 29995.9 Da    PI: 8.6464
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_14866_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.62.9e-181257147
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
             Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                                +g+W++eEde l ++v+ +G+++W++I++ ++ gR++k+c++rw + 
  Cotton_A_14866_BGI-A2_v1.0 12 KGPWSPEEDEALHRLVQTYGPRNWTLISKSIP-GRSGKSCRLRWCNQ 57
                                79******************************.***********985 PP
2Myb_DNA-binding54.42.9e-1766108347
                                 SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
             Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                 ++T+eEd+ +++a+++ G++ W+tIar ++ gRt++ +k++w++ 
  Cotton_A_14866_BGI-A2_v1.0  66 PFTPEEDDTIIRAHARVGNK-WATIARLLN-GRTDNAIKNHWNST 108
                                 89******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129426.321762IPR017930Myb domain
SuperFamilySSF466899.36E-339105IPR009057Homeodomain-like
SMARTSM007173.4E-171160IPR001005SANT/Myb domain
PfamPF002494.5E-181257IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.5E-261365IPR009057Homeodomain-like
CDDcd001678.54E-171456No hitNo description
SMARTSM007171.8E-1463111IPR001005SANT/Myb domain
PROSITE profilePS5129420.97364113IPR017930Myb domain
PfamPF002495.0E-1566108IPR001005SANT/Myb domain
CDDcd001678.14E-1266109No hitNo description
Gene3DG3DSA:1.10.10.601.9E-2366112IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MASTRKDMDR IKGPWSPEED EALHRLVQTY GPRNWTLISK SIPGRSGKSC RLRWCNQLSP  60
EVEHRPFTPE EDDTIIRAHA RVGNKWATIA RLLNGRTDNA IKNHWNSTLK RKCLSMTEGF  120
NDDSPQPLKR SASLGTGNPS SPSGSDLSDS SLPAPSPAFK TGSLVPLSQH VETASSATDP  180
PTLLSLSLPG SDFTEPVSPP GFNPTQVTTQ ASAPVPAPVE KQFFSAEFFA VMKEMIRKEV  240
RSYMAGIEQN ELCLQTEAIR NAVVKRIGIS KIE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C1e-41111133105C-Myb DNA-Binding Domain
1msf_C1e-41111133105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5860786e-47JX586078.1 Gossypium hirsutum clone NBRI_GE19816 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017643016.10.0PREDICTED: transcription factor MYB44-like
SwissprotO231604e-93MYB73_ARATH; Transcription factor MYB73
TrEMBLA0A1U8LWF20.0A0A1U8LWF2_GOSHI; transcription factor MYB44-like
STRINGGorai.010G023500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM67728135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37260.12e-72myb domain protein 73
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]