PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_14848_BGI-A2_v1.0
Common NameF383_06933
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family LBD
Protein Properties Length: 204aa    MW: 21833.7 Da    PI: 4.9851
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_14848_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26090.42.2e-282104198
                      DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavg 78 
                                 +C++C+vlr++C++ Cvl+  +     +++q +++ +++k+FG+s +l+l++++pe++r+++++sl++eA+ r+ +Pv+Gavg
  Cotton_A_14848_BGI-A2_v1.0   2 SCNGCRVLRKGCSETCVLRSSLrwiesAEAQGNATLFLAKFFGRSDLLSLISSVPESQRPALFQSLLFEACGRTVNPVNGAVG 84 
                                 6*********************9999777889*************************************************** PP

                      DUF260  79 vilklqqqleqlkaelallk 98 
                                 ++++++++++q+++e++l++
  Cotton_A_14848_BGI-A2_v1.0  85 LLSSGNWHICQAAVETVLQG 104
                                 **************998875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089118.5131107IPR004883Lateral organ boundaries, LOB
PfamPF031954.3E-242101IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSETCVLR SSLRWIESAE AQGNATLFLA KFFGRSDLLS LISSVPESQR  60
PALFQSLLFE ACGRTVNPVN GAVGLLSSGN WHICQAAVET VLQGGALRPI SAGSWTPSCD  120
ESSDRFCVNS CNFESKPLTT TMMMTGNQSV LTAPSDLSLS VTAKLGGEMR TKTASLYSEE  180
SEITTLGSNG NEETQDTKIL NLFV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017645896.11e-147PREDICTED: LOB domain-containing protein 39-like
SwissprotQ9SZE81e-67LBD39_ARATH; LOB domain-containing protein 39
TrEMBLA0A0B0NLR91e-146A0A0B0NLR9_GOSAR; LOB domain-containing 39-like protein
STRINGGorai.010G025100.11e-144(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM82128122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37540.15e-70LOB domain-containing protein 39