PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_14822_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 484aa    MW: 53850.2 Da    PI: 8.0019
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_14822_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.81.2e-134592148
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
             Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                +g+WT+ Ed  l+ +v+++G g+W+++ +  g+ R++k+c++rw ++l
  Cotton_A_14822_BGI-A2_v1.0 45 KGPWTAAEDAVLAGYVRRHGEGNWNAVRKNTGLARCGKSCRLRWANHL 92
                                79******************************************9986 PP
2Myb_DNA-binding47.25.2e-1598141146
                                 TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
             Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                 +g+++ eE+ +++++++++G++ W++ a  ++ gRt++++k++w++
  Cotton_A_14822_BGI-A2_v1.0  98 KGSFSSEEERIIIELHAKMGNR-WARMATQLP-GRTDNEIKNYWNT 141
                                 799*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.3094092IPR017930Myb domain
SuperFamilySSF466894.69E-2844139IPR009057Homeodomain-like
SMARTSM007175.2E-104494IPR001005SANT/Myb domain
PfamPF002491.0E-124592IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.4E-224699IPR009057Homeodomain-like
CDDcd001678.82E-94792No hitNo description
PROSITE profilePS5129424.87693147IPR017930Myb domain
SMARTSM007178.9E-1697145IPR001005SANT/Myb domain
PfamPF002498.1E-1498141IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-24100146IPR009057Homeodomain-like
CDDcd001672.97E-11100141No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 484 aa     Download sequence    Send to blast
MMMMMMMGGN NQFTAQNEGG GSLSNNGMNN GGVGVGREGE IVLKKGPWTA AEDAVLAGYV  60
RRHGEGNWNA VRKNTGLARC GKSCRLRWAN HLRPNLKKGS FSSEEERIII ELHAKMGNRW  120
ARMATQLPGR TDNEIKNYWN TRVKRRQRQG LPLYPPHVQP HYSQHRQRHS HPPSPIPSPP  180
PTTEPNSCFS FQTPVVSPHT SNPMPLHSLH IPHRPPPQNF LYNPHSALTT PPPPLQSPNS  240
ALAPPPLPSP NALTPPHTSP LYSPHNPSPF PTLPLFDYPN ITTDDDFFHS NKRFKHDGLQ  300
SNNYNNIHLD AASSSFTLPF SPMQHYSNGM TLDLPSSSRT AFNHHPHQDS GCFYPLKTDL  360
RSNQINDDGL LENILQEARA LAANGRGGNK EMPKEMMNSA QNEEEDYSRL INIDGLSSLG  420
MAIPEWCNDS GESSERQPSV ITDNENHLAL DMHQLASLYP ADISPNHAAR SSSVRSWDKF  480
PGLC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-31431465107B-MYB
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6162609e-66JX616260.1 Gossypium hirsutum clone NBRI_GE60774 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017635022.10.0PREDICTED: transcriptional activator Myb-like
TrEMBLA0A2P5YTQ90.0A0A2P5YTQ9_GOSBA; Uncharacterized protein
STRINGGorai.007G312700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G55020.19e-61myb domain protein 120