PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_14816_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 496aa    MW: 55560.9 Da    PI: 7.8616
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_14816_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.19.5e-144491148
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
             Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                +g+WT+ Ed  l+++v+ +G g+W+++ +  g+ R++k+c++rw ++l
  Cotton_A_14816_BGI-A2_v1.0 44 KGPWTAIEDAVLAEYVRSHGEGSWNAVQKNTGLARCGKSCRLRWVNHL 91
                                79*******************************************996 PP
2Myb_DNA-binding47.15.5e-1597140146
                                 TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
             Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                 +g++++eE++++++++++ G++ W++ a  ++ gRt++++k++w++
  Cotton_A_14816_BGI-A2_v1.0  97 KGSFSPEEEKIIIELHAKKGNK-WARMAIQLP-GRTDNEIKNYWNT 140
                                 799*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.7923991IPR017930Myb domain
SuperFamilySSF466893.24E-2741138IPR009057Homeodomain-like
SMARTSM007172.5E-114393IPR001005SANT/Myb domain
PfamPF002495.1E-134491IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.7E-224598IPR009057Homeodomain-like
CDDcd001673.78E-94691No hitNo description
PROSITE profilePS5129424.5792146IPR017930Myb domain
SMARTSM007173.6E-1596144IPR001005SANT/Myb domain
PfamPF002492.4E-1497140IPR001005SANT/Myb domain
CDDcd001674.47E-1199140No hitNo description
Gene3DG3DSA:1.10.10.606.1E-2499145IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 496 aa     Download sequence    Send to blast
MMMMMMGGNN QFTTQNEGGE PLGNNGMNNS GVCSGRESGI PLKKGPWTAI EDAVLAEYVR  60
SHGEGSWNAV QKNTGLARCG KSCRLRWVNH LRPNLKKGSF SPEEEKIIIE LHAKKGNKWA  120
RMAIQLPGRT DNEIKNYWNT RVKRRQRQGL PLYPPNVQPF YSQHQHQHQH RQRHSHPPSP  180
IPSPPPTTAP NSCFSFQTPV VSLHTSNPMP LHPLHIPHRP PPQNFLYNPH SALTTPPLPL  240
QSPNSASTPP PLPSPSASTP PHISPLHSPH NPPPFPTLPL INYPNTTTDD DFFHSNKRFK  300
HDRLQSNNYN NNHLDATSSS FTLPFSPMQH YSNRMTLDLP SSSRTTFNHH PHQDSGDFYP  360
LKMDLRSNQI NDDGLLETML QEAQALAANG SGGNNEIPKE TMNAAQNEED YSRLINIDGP  420
SSFSIAIPEW CNDSGESSER QPFAIIDNEN HLAPDNHQIA SLYPADISPH HAARSSSVRS  480
WDNFPVLEQS RFLVKI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-29391451107B-MYB
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6159925e-52JX615992.1 Gossypium hirsutum clone NBRI_GE60319 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012488302.10.0PREDICTED: myb-like protein A
TrEMBLA0A0D2R2P10.0A0A0D2R2P1_GOSRA; Uncharacterized protein
STRINGGorai.007G312400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM51002747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32460.15e-68myb domain protein 101