PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_14814_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | ERF | ||||||||
Protein Properties | Length: 210aa MW: 23139.9 Da PI: 9.5621 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64.9 | 1.6e-20 | 25 | 75 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++y+GVr ++ +gr++AeIrdp++ ++r++lg+f++ae+Aa+a++aa+++l+g Cotton_A_14814_BGI-A2_v1.0 25 PRYRGVRKRP-WGRFAAEIRDPVK---KTRVWLGTFDSAEDAARAYDAAARQLRG 75 68********.**********654...5*************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 6.4E-14 | 25 | 75 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.80E-18 | 25 | 85 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 9.1E-33 | 26 | 84 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.17E-23 | 26 | 85 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 24.012 | 26 | 83 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.8E-38 | 26 | 89 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.8E-11 | 27 | 38 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.8E-11 | 49 | 65 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence Send to blast |
MRRGRVSANV AEKPAVENNG SLKEPRYRGV RKRPWGRFAA EIRDPVKKTR VWLGTFDSAE 60 DAARAYDAAA RQLRGPKAKT NFPVNSSNIA AFADDGRRLY PVGDFEDPVV NPQRPTRSSM 120 SSTVESFSGP RPAQVPPQKS TDFAAVSTRK YRPRTPPLAP EDCHSDCDSS SSVVDDGVIA 180 SSSRRRMLPF DLNFPPLDDA DDLQCTALCL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 8e-22 | 23 | 87 | 2 | 69 | ATERF1 |
3gcc_A | 8e-22 | 23 | 87 | 2 | 69 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the regulation of gene expression by abscisic acid, stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Part of a transcriptional repressor complex including a histone deacetylase. {ECO:0000269|PubMed:11487705, ECO:0000269|PubMed:15994908}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF555288 | 1e-172 | KF555288.1 Gossypium barbadense ERF transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017634966.1 | 1e-151 | PREDICTED: ethylene-responsive transcription factor 3-like | ||||
Swissprot | Q9LDE4 | 7e-54 | ERF83_ARATH; Ethylene-responsive transcription factor 7 | ||||
TrEMBL | A0A2P5YTN6 | 1e-134 | A0A2P5YTN6_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.007G312200.1 | 1e-120 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G50640.1 | 5e-45 | ethylene responsive element binding factor 3 |
Publications ? help Back to Top | |||
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