PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_14739_BGI-A2_v1.0 | ||||||||
Common Name | F383_03596 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | bHLH | ||||||||
Protein Properties | Length: 307aa MW: 34147.7 Da PI: 6.7225 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 53.7 | 3.7e-17 | 147 | 193 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P++ K +Ka++L +A+eY+ksLq Cotton_A_14739_BGI-A2_v1.0 147 VHNLSERRRRDRINEKMRALQELIPHC-----NKTDKASMLDEAIEYLKSLQ 193 6*************************8.....6******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.01E-21 | 141 | 209 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 18.457 | 143 | 192 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 8.16E-19 | 146 | 197 | No hit | No description |
Pfam | PF00010 | 1.8E-14 | 147 | 193 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.5E-21 | 147 | 203 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 7.2E-19 | 149 | 198 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009585 | Biological Process | red, far-red light phototransduction | ||||
GO:0009693 | Biological Process | ethylene biosynthetic process | ||||
GO:0010244 | Biological Process | response to low fluence blue light stimulus by blue low-fluence system | ||||
GO:0010600 | Biological Process | regulation of auxin biosynthetic process | ||||
GO:0010928 | Biological Process | regulation of auxin mediated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 307 aa Download sequence Send to blast |
MFSNFFSEFP AYDPMDHQHE QQEDDKSLKH KNNLMQREVN ELSGMAIGSS HCGSNQVRND 60 GDLSRGSSNG IGTTSTGLSV GTSKDDEDDY NGGQVENEKG TSVGVTSSQK RKNGDGREDY 120 ECQSEFAEDK PVRRSGSYRR RSRAAEVHNL SERRRRDRIN EKMRALQELI PHCNKTDKAS 180 MLDEAIEYLK SLQSQLQVMW MGNGMAPMMF PGIQHYMSPM AMGTAPPTMP SIQNQRFIQN 240 PTFSEQYARF LGFQHMQTAS QPINMFGYGS QTTPQSPTVL GFSNGSNQLN GGTTAANNTS 300 LSGKIVN |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 138 | 155 | RRRSRAAEVHNLSERRRR |
2 | 151 | 156 | ERRRRD |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00082 | ChIP-seq | Transfer from AT3G59060 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017610078.1 | 0.0 | PREDICTED: transcription factor PIF4-like | ||||
TrEMBL | A0A0B0P6L3 | 0.0 | A0A0B0P6L3_GOSAR; Transcription factor PIF5-like protein | ||||
STRING | Gorai.006G008800.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3468 | 25 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43010.2 | 1e-36 | phytochrome interacting factor 4 |