PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_14726_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family TCP
Protein Properties Length: 285aa    MW: 31976.8 Da    PI: 8.5012
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_14726_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP98.61.1e-3052132274
                         TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa......sec..e 74 
                                  g+kdrhsk++T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WLl++ak++i+el+ ++ +++      s++   
  Cotton_A_14726_BGI-A2_v1.0  52 FGGKDRHSKVYTIRGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLNAAKHEIDELPPLPMPPPpanfpiSDAfwR 132
                                 689*************************************************************66665333333111221 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136931.00454112IPR017887Transcription factor TCP subgroup
PfamPF036345.2E-2854139IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MISSSKNTDF PTRQDEDDDK RNETNKGPSS SSSSSQWLRL KDPRIVRVSR AFGGKDRHSK  60
VYTIRGLRDR RVRLSVPTAI QLYDLQDRLG LNQPSKVVDW LLNAAKHEID ELPPLPMPPP  120
PANFPISDAF WRTKSKEVTR DVIDDKDDKH RRNEGDDDDD HGTQLVSSGS YYHFQPSNFP  180
LSSHLASHGF AVHAPQVDNF NVVAAPLPSA LSLCPLPPPQ PGGGAPPLFP PHVVDPRQQV  240
NHFQMLSSGA QQNLLLNSLN FPPITQSFRP FQLMPPRFPH NQPDK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A1e-1859113155Putative transcription factor PCF6
5zkt_B1e-1859113155Putative transcription factor PCF6
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ5277081e-151HQ527708.1 Gossypium herbaceum clone NBRI_A_8683 simple sequence repeat marker, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016668162.10.0PREDICTED: transcription factor TCP13-like
RefseqXP_016668163.10.0PREDICTED: transcription factor TCP13-like
RefseqXP_016668164.10.0PREDICTED: transcription factor TCP13-like
RefseqXP_017608896.10.0PREDICTED: transcription factor TCP13-like
RefseqXP_017608897.10.0PREDICTED: transcription factor TCP13-like
RefseqXP_017608898.10.0PREDICTED: transcription factor TCP13-like
TrEMBLA0A1U8HW400.0A0A1U8HW40_GOSHI; transcription factor TCP13-like
TrEMBLA0A2P5X3E50.0A0A2P5X3E5_GOSBA; Uncharacterized protein
STRINGGorai.006G009800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2826933
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02150.11e-40plastid transcription factor 1