PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_14593_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

TCP

Protein Properties

Length: 243aa MW: 25308.5 Da PI: 10.6333

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_14593_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	123.9	1.7e-38	28	113	2	88
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasn 84 a kk++++++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as+++ + s+ ++ Cotton_A_14593_BGI-A2_v1.0 28 AIKKTPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFSTMSVSVRGGA- 109 689******************************************************************8883333333333. PP TCP 85 sssg 88 +s + Cotton_A_14593_BGI-A2_v1.0 110 NSTS 113 2222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.1E-33	33	121	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	28.209	34	88	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 243 aa Download sequence Send to blast
MSNSEGGATN GAIMDPQRQQ ATVNGSLAIK KTPSKDRHSK VDGRGRRIRM PIICAARVFQ 60 LTRELGHKSD GQTIEWLLRQ AEPSIIAATG TGTTPASFST MSVSVRGGAN STSLSSTTAS 120 PSLDHKPLLG PTPFILGKRV RSDDDNPGKY DTGGVMVGPG VVGPAGGFWA LPGRADFGQL 180 WSFPPPAEMA AHQPAAALFV QQQQAMGEAS AARVGNYLPG HLNLLASLSG APGSSGRRGE 240 DPR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017638324.1	1e-177	PREDICTED: transcription factor TCP7-like
Swissprot	Q9FMX2	4e-92	TCP7_ARATH; Transcription factor TCP7
TrEMBL	A0A2P5R993	1e-174	A0A2P5R993_GOSBA; Uncharacterized protein
STRING	Gorai.008G147800.1	1e-173	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1782	26	85

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23280.1	3e-66	TCP family protein