PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_14550_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

HRT-like

Protein Properties

Length: 440aa MW: 48310.5 Da PI: 8.7642

Description

HRT-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_14550_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HRT-like	24.7	4.1e-08	283	307	1	26
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeH 26 iCG+++ +G +C+r Pv g+ RC++H Cotton_A_14550_BGI-A2_v1.0 283 ICGATTYNGAPCER-PVSGNGRCWQH 307 8*********97.9******** PP

Sequence ? help Back to Top
Protein Sequence Length: 440 aa Download sequence Send to blast
MNREDHKKTD HDSHFSEWKL LICPHDWKNG KGGAVTRYRF ENLPKSSGPG IYELAVCKLP 60 SRDRRGKLEP DRVVYVGEAE NIRARLQQYG RDGTHLCRKN GFGEKGCPSF DKIFARGCSI 120 IYRWARMKSK AAAQRTEAQL LEKFDYAWNK GSNGARRHND ILRKLDKHVS NKKHLPIKIK 180 SNKQVNGRCR SHLNYGGDGG SSFTPRWLDH GGGGGDFTSI CGAPTCDGAP CERPVNGNGR 240 CWQHSNYGRS SSCFTSRSLN YGGYGSSFTP QWLDHGGDDI ILICGATTYN GAPCERPVSG 300 NGRCWQHLDY GRDGGSSFTP QWLDHGGGDI TSVCGAPTCD GAPCERPVSG NGRCWQHSNY 360 GRSSSCFTSR NLNYGGYGSS FTPRWLDHGG DDIILICGAT TCNGAPCERP VIGNGRCWQH 420 LDYGCSSSSS SSSSSSSGRY

Sequence ? help Back to Top

Protein Sequence Length: 440 aa Download sequence Send to blast

MNREDHKKTD HDSHFSEWKL LICPHDWKNG KGGAVTRYRF ENLPKSSGPG IYELAVCKLP  60
SRDRRGKLEP DRVVYVGEAE NIRARLQQYG RDGTHLCRKN GFGEKGCPSF DKIFARGCSI  120
IYRWARMKSK AAAQRTEAQL LEKFDYAWNK GSNGARRHND ILRKLDKHVS NKKHLPIKIK  180
SNKQVNGRCR SHLNYGGDGG SSFTPRWLDH GGGGGDFTSI CGAPTCDGAP CERPVNGNGR  240
CWQHSNYGRS SSCFTSRSLN YGGYGSSFTP QWLDHGGDDI ILICGATTYN GAPCERPVSG  300
NGRCWQHLDY GRDGGSSFTP QWLDHGGGDI TSVCGAPTCD GAPCERPVSG NGRCWQHSNY  360
GRSSSCFTSR NLNYGGYGSS FTPRWLDHGG DDIILICGAT TCNGAPCERP VIGNGRCWQH  420
LDYGCSSSSS SSSSSSSGRY

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ527482	1e-146	HQ527482.1 Gossypium herbaceum clone NBRI_C_EYT27PB01BJYPK simple sequence repeat marker, mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017625176.1	0.0	PREDICTED: protein EFFECTOR OF TRANSCRIPTION 2-like
TrEMBL	A0A1U8MU95	0.0	A0A1U8MU95_GOSHI; protein EFFECTOR OF TRANSCRIPTION 2-like isoform X2
STRING	Gorai.N024000.1	1e-175	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2954	27	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56780.1	6e-60	effector of transcription2