PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_14549_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

HRT-like

Protein Properties

Length: 567aa MW: 63519.1 Da PI: 9.54

Description

HRT-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_14549_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HRT-like	57.8	1.8e-18	262	290	2	30
HRT-like 2 CGviledGsvCkrqPvkgRKRCeeHKGmR 30 CGv l+dGs+Ckr+Pv+gRKRC+eHKG++ Cotton_A_14549_BGI-A2_v1.0 262 CGVVLDDGSICKRPPVEGRKRCAEHKGKK 290 ***************************98 PP
2	HRT-like	56.8	3.8e-18	318	348	1	31
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 iCGv+++dGs C+rqPv gRKRC HKG+Ri Cotton_A_14549_BGI-A2_v1.0 318 ICGVAMDDGSLCRRQPVSGRKRCDLHKGRRI 348 8*****************************7 PP
3	HRT-like	56.8	3.8e-18	422	452	1	31
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 iCGv+++dGs C+rqPv gRKRC HKG+Ri Cotton_A_14549_BGI-A2_v1.0 422 ICGVAMDDGSLCRRQPVSGRKRCDLHKGRRI 452 8*****************************7 PP

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:2000033	Biological Process	regulation of seed dormancy process
GO:0097100	Molecular Function	supercoiled DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 567 aa Download sequence Send to blast
MGAAKLADVV TRFNREDHKR TKHDSQFSKW KVLIGPHDWE DHSVGKEGVA RYRVENLPKT 60 ASSGLYELAI NKPSSRDHNG KLDSDKVLVV YLGEADNVRS RLQQYGRTGA HLGRNDSGNN 120 KVCGCFEDIF ARGYSIVYRW APMKNKADAR RTEAQLLGTF DYAWNKGSNG IRRHDDILQK 180 LDKHASNLMK LANFSKKHLP FLQKQVGIKI KAGKLVLDNN EFGKYKNGEN RNFLLQVFNF 240 SRSRPRLVSN HGGSDENETF SCGVVLDDGS ICKRPPVEGR KRCAEHKGKK TRGSSTRSST 300 KSQPHKEDYP EIEHCSPICG VAMDDGSLCR RQPVSGRKRC DLHKGRRIYS SDSEITRYQT 360 MPYAVFNSYS DEKASVFDEN HTGMKITTLV SGLDETRAST SSSMKSQPHK EDYPEIEHCS 420 PICGVAMDDG SLCRRQPVSG RKRCDLHKGR RIYSSGSEIT SYETMPYAIS NPYSDEKDSN 480 SSLNSNNCST PICGVLTCNG TPCKRTVNGN GRCWQHLKYS GSHSSSNYFI PRISNYDSTG 540 TSICGAPTRN GSFCRRTVKG NGTCWQH

Sequence ? help Back to Top

Protein Sequence Length: 567 aa Download sequence Send to blast

MGAAKLADVV TRFNREDHKR TKHDSQFSKW KVLIGPHDWE DHSVGKEGVA RYRVENLPKT  60
ASSGLYELAI NKPSSRDHNG KLDSDKVLVV YLGEADNVRS RLQQYGRTGA HLGRNDSGNN  120
KVCGCFEDIF ARGYSIVYRW APMKNKADAR RTEAQLLGTF DYAWNKGSNG IRRHDDILQK  180
LDKHASNLMK LANFSKKHLP FLQKQVGIKI KAGKLVLDNN EFGKYKNGEN RNFLLQVFNF  240
SRSRPRLVSN HGGSDENETF SCGVVLDDGS ICKRPPVEGR KRCAEHKGKK TRGSSTRSST  300
KSQPHKEDYP EIEHCSPICG VAMDDGSLCR RQPVSGRKRC DLHKGRRIYS SDSEITRYQT  360
MPYAVFNSYS DEKASVFDEN HTGMKITTLV SGLDETRAST SSSMKSQPHK EDYPEIEHCS  420
PICGVAMDDG SLCRRQPVSG RKRCDLHKGR RIYSSGSEIT SYETMPYAIS NPYSDEKDSN  480
SSLNSNNCST PICGVLTCNG TPCKRTVNGN GRCWQHLKYS GSHSSSNYFI PRISNYDSTG  540
TSICGAPTRN GSFCRRTVKG NGTCWQH

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017623554.1	0.0	PREDICTED: protein EFFECTOR OF TRANSCRIPTION 2-like
TrEMBL	A0A2P5WBE4	0.0	A0A2P5WBE4_GOSBA; Uncharacterized protein
STRING	EOY30505	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2954	27	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56780.1	1e-103	effector of transcription2