PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_14438_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 226aa    MW: 24731.6 Da    PI: 5.1313
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_14438_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2544.1e-1767114355
                         AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                 y+G+r+++  g+Wv+eIr+p++   ++r++lg++ t+e+Aa+a++ a+++l+g
  Cotton_A_14438_BGI-A2_v1.0  67 YRGIRYRS--GKWVSEIREPRK---TTRIWLGTYPTPEMAAAAYDVAALALKG 114
                                 9****976..*********843...5************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.55E-1866124IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.6E-2666123IPR001471AP2/ERF domain
PROSITE profilePS5103220.29766122IPR001471AP2/ERF domain
SMARTSM003805.5E-2966128IPR001471AP2/ERF domain
PfamPF008473.7E-1167114IPR001471AP2/ERF domain
CDDcd000182.53E-1767124No hitNo description
PRINTSPR003671.1E-66778IPR001471AP2/ERF domain
PRINTSPR003671.1E-6104124IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MTDPNNPTDD HRSQPPIPSS FDHPNIQVPH PLLTHTCEDP PPTCDKLPPA GKSPMASSSS  60
PGKHPMYRGI RYRSGKWVSE IREPRKTTRI WLGTYPTPEM AAAAYDVAAL ALKGSEAVVN  120
FPASVASYRL PVSTSSADIR KAASAAASLK KDEMKSGINI GTDEYHQAKD REEMSKEEYV  180
DEDALLDLPN LLVDMAQGML VSPPRIRSTP SDESPENSDG ESLWSY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-1460127168ATERF1
3gcc_A7e-1460127168ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5865423e-67JX586542.1 Gossypium hirsutum clone NBRI_GE20385 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016724618.11e-164PREDICTED: ethylene-responsive transcription factor ERF027-like
SwissprotQ9FJ901e-51ERF25_ARATH; Ethylene-responsive transcription factor ERF025
TrEMBLA0A2P5VYD81e-163A0A2P5VYD8_GOSBA; Uncharacterized protein
STRINGGorai.008G243700.11e-143(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19572777
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.16e-45ERF family protein
Publications ? help Back to Top
  1. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]