PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_14431_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family TCP
Protein Properties Length: 385aa    MW: 41254.4 Da    PI: 9.0042
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_14431_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP1128.5e-3586185289
                         TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.......eaes 77 
                                 ++k++ ++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++t+ WLl+ a++ai+e+tgt++ +a ++        + +
  Cotton_A_14431_BGI-A2_v1.0  86 TAKRSYNKDRHTKVEGRGRRIRIPATCAARIFQLTRELGHKSDGETVRWLLEHAEHAIIEATGTGTVPAIAVsvggtlkIPTT 168
                                 678999**********************************************************7777733333333222222 PP

                         TCP  78 ssssasnsssg.....k 89 
                                 s  ++sn++s+     k
  Cotton_A_14431_BGI-A2_v1.0 169 SITNTSNNNSQiddrtK 185
                                 22222222222112111 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136926.43692146IPR017887Transcription factor TCP subgroup
PfamPF036348.9E-2992183IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MDPSEDAGTS DLSTSTGGPN NATPTAANSV KNDENCENSA LMVMPLKEEP IEPDPDRKTH  60
PPRPIRVVPV SRQMSMQIPI PTPVTTAKRS YNKDRHTKVE GRGRRIRIPA TCAARIFQLT  120
RELGHKSDGE TVRWLLEHAE HAIIEATGTG TVPAIAVSVG GTLKIPTTSI TNTSNNNSQI  180
DDRTKKRKRP ASSEFCDVND GIPIAIAQQQ QQQQRLVTQY SGLAPVAQQA LVPVWAVGNT  240
GMMVPANAFW MIPQSTPTAS GDWLTNQRPP PQLWAFSPAL TSACNIAVRP TSSFVATTTE  300
TQAVVCDGVS TLAVSTSSTP VGATEAKKST MAPSVSSGGN GGGGTGGKAQ MLRDFSLEIY  360
DKQELQLMGR SWNHHQQQIK AASKQ
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ5272250.0HQ527225.1 Gossypium herbaceum clone NBRI_B_2245 simple sequence repeat marker, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017640623.10.0PREDICTED: transcription factor TCP19-like
TrEMBLA0A1U8MCZ20.0A0A1U8MCZ2_GOSHI; transcription factor TCP19-like
STRINGGorai.008G243000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17337611
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45680.11e-58TCP family protein