PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_14429_BGI-A2_v1.0 | ||||||||
Common Name | F383_01633 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | TALE | ||||||||
Protein Properties | Length: 303aa MW: 34657.3 Da PI: 6.845 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 23.2 | 1.2e-07 | 252 | 285 | 21 | 54 |
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 k +yp+++++++L +++gL+ +q+ +WF N+R + Cotton_A_14429_BGI-A2_v1.0 252 KWPYPTEDDKAKLVEETGLQLKQINNWFINQRKR 285 469*****************************87 PP | |||||||
2 | ELK | 27.3 | 8.4e-10 | 206 | 227 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK +L+++Y++++ ++++E++ Cotton_A_14429_BGI-A2_v1.0 206 ELKIELKQGYKSKIEDVREEIL 227 9*******************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 7.9E-16 | 37 | 81 | IPR005540 | KNOX1 |
Pfam | PF03790 | 3.2E-15 | 39 | 80 | IPR005540 | KNOX1 |
SMART | SM01256 | 3.6E-23 | 95 | 150 | IPR005541 | KNOX2 |
Pfam | PF03791 | 1.7E-17 | 98 | 149 | IPR005541 | KNOX2 |
PROSITE profile | PS51213 | 9.568 | 206 | 226 | IPR005539 | ELK domain |
Pfam | PF03789 | 1.7E-4 | 206 | 227 | IPR005539 | ELK domain |
SMART | SM01188 | 0.0081 | 206 | 227 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 11.645 | 226 | 289 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.2E-10 | 228 | 293 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 6.42E-16 | 228 | 292 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.18E-11 | 229 | 290 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.3E-25 | 233 | 292 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 1.0E-17 | 246 | 285 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 303 aa Download sequence Send to blast |
MQEPELGMMA NFGGTTTAAI GGLSSRELSV PLDQNHRQLK AEIATHPLYD QLLTAHVSCL 60 RVATTIEQLP LIDAQLAQCH NVLRSYASQH PQHGHSLSPH HRQDLDNFLA QYLIMLCRFK 120 EELQQHVRVD AVEAVMACRE IENNLHALTG VTLGESTGAT MSDDEDELQM DFPLDNSGVE 180 ANDLMGFGPL LPTESERTLM ERVRKELKIE LKQGYKSKIE DVREEILRKR RAGKLPGDTT 240 SVLKNWWQQH SKWPYPTEDD KAKLVEETGL QLKQINNWFI NQRKRNWHTN YQSTTSLKSK 300 RKR |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 282 | 302 | RKRNWHTNYQSTTSLKSKRKR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May be involved in secondary cell wall biosynthesis. {ECO:0000269|PubMed:15980264}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016724639.1 | 0.0 | PREDICTED: homeobox protein HD1-like | ||||
Refseq | XP_017642739.1 | 0.0 | PREDICTED: homeobox protein HD1-like | ||||
Swissprot | Q9FPQ8 | 1e-157 | KNAT7_ARATH; Homeobox protein knotted-1-like 7 | ||||
TrEMBL | A0A0B0PS88 | 0.0 | A0A0B0PS88_GOSAR; Homeobox protein knotted-1-like 7 | ||||
TrEMBL | A0A1U8MGE6 | 0.0 | A0A1U8MGE6_GOSHI; homeobox protein HD1-like | ||||
TrEMBL | A0A2P5XKZ2 | 0.0 | A0A2P5XKZ2_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.008G242800.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM444 | 28 | 158 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G62990.1 | 1e-160 | KNOTTED-like homeobox of Arabidopsis thaliana 7 |
Publications ? help Back to Top | |||
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