PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_14407_BGI-A2_v1.0 | ||||||||
Common Name | F383_08457 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | ARF | ||||||||
Protein Properties | Length: 691aa MW: 76963.1 Da PI: 6.4322 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 71.8 | 8.8e-23 | 129 | 229 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkeg 77 f k+lt sd++++g +++ +k+a+e+ ++ ++ +++l+ +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +g Cotton_A_14407_BGI-A2_v1.0 129 FSKILTASDTSTHGGFSVLRKHATEClppldmNLATP-TQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAG 210 889***************************9744444.459****************************************** PP -EEEEEE-SSSEE..EEEEE- CS B3 78 DfvvFkldgrsefelvvkvfr 98 D +vF + +++el+v+v+r Cotton_A_14407_BGI-A2_v1.0 211 DAFVFL--RGDNGELRVGVRR 229 ******..3489999****98 PP | |||||||
2 | Auxin_resp | 103.7 | 2.3e-34 | 255 | 334 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aaha++t++ F v+Y+P+ ts+F++ v+k+++a+++ +svGmRfkm+fe+eds+err++Gt+vgv d++p +W++SkWrsLk Cotton_A_14407_BGI-A2_v1.0 255 AAHAVTTHTLFVVYYKPS--TSQFIIGVNKYLEAINNGFSVGMRFKMRFEGEDSPERRFTGTIVGVGDISP-HWSESKWRSLK 334 79***************8..59***********************************************99.*********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 2.49E-39 | 114 | 258 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.5E-39 | 121 | 244 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.43E-20 | 127 | 229 | No hit | No description |
Pfam | PF02362 | 1.0E-20 | 129 | 229 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 9.3E-22 | 129 | 231 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.28 | 129 | 231 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.1E-31 | 255 | 334 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 6.6E-8 | 559 | 613 | IPR033389 | AUX/IAA domain |
SuperFamily | SSF54277 | 1.11E-12 | 575 | 653 | No hit | No description |
PROSITE profile | PS51745 | 26.42 | 577 | 669 | IPR000270 | PB1 domain |
Pfam | PF02309 | 4.2E-6 | 618 | 665 | IPR033389 | AUX/IAA domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 691 aa Download sequence Send to blast |
MAHLEGNQRG SSTAHAVSGS AGDDLYQELW KLCAGPLVEI PRVHERVFYF PQGHMEQLEA 60 STNQELSNQT PLFNLPSKIL CRVLHVELLA EQETDEVYAQ ITLQPEDQSE PTSLDPFPTE 120 APKRTVHSFS KILTASDTST HGGFSVLRKH ATECLPPLDM NLATPTQELV AKDLHGYEWR 180 FKHIFRGQPR RHLLTTGWST FVTSKRLVAG DAFVFLRGDN GELRVGVRRL ARQQSTMPSS 240 VISSQSMHLG VLATAAHAVT THTLFVVYYK PSTSQFIIGV NKYLEAINNG FSVGMRFKMR 300 FEGEDSPERR FTGTIVGVGD ISPHWSESKW RSLKIQWDEP AAIQRPERVS PWEIEPFVDS 360 ASANLQPTIM CKRPRPVDIP ASEITTGSAG SAFWCRESIQ SHELTPVGST LEVQSSENQV 420 MCPMRQKEAD DCLINGNGGY KSRTPPENAW PPSPLVNVSL NLFPDSMENN YKTGALQTAL 480 TGYAKSLMHD QVVKRKTETF TGCRLFGFNL TDSTSVAAPP DKEQMSTSID YNGVRGPIPA 540 AFHVEQKPET SKEQKQVASE TSTQEMQAKQ GSATSMRSRT KVHMQGIAVG RAVDLTALKG 600 YNDLINELEK MFEIKGELCR SGQWSIVFTD DEGDMMLVGD DPWVEFCKMV RKIFIYSSEE 660 VKKISTRCKF PAASMECEGT VVSLDSEHRS V |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 1e-168 | 19 | 357 | 13 | 355 | Auxin response factor 1 |
4ldw_A | 1e-168 | 19 | 357 | 13 | 355 | Auxin response factor 1 |
4ldw_B | 1e-168 | 19 | 357 | 13 | 355 | Auxin response factor 1 |
4ldx_A | 1e-168 | 19 | 357 | 13 | 355 | Auxin response factor 1 |
4ldx_B | 1e-168 | 19 | 357 | 13 | 355 | Auxin response factor 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 371 | 375 | KRPRP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ567000 | 6e-40 | AJ567000.1 Gossypium hirsutum microsatellite DNA mGhCIR051, clone CIR051. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017630994.1 | 0.0 | PREDICTED: auxin response factor 18-like isoform X2 | ||||
Swissprot | Q9C5W9 | 0.0 | ARFR_ARATH; Auxin response factor 18 | ||||
TrEMBL | A0A0B0P0R2 | 0.0 | A0A0B0P0R2_GOSAR; Auxin response factor | ||||
STRING | Gorai.007G109500.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2764 | 27 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G61830.1 | 0.0 | auxin response factor 18 |
Publications ? help Back to Top | |||
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