PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_14406_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | ERF | ||||||||
Protein Properties | Length: 187aa MW: 20976.3 Da PI: 6.3527 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56 | 1e-17 | 36 | 85 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+G+r ++ +g+Wv+eIr+p++ + r++lg+f +e+Aaka++ a+ +l+g Cotton_A_14406_BGI-A2_v1.0 36 VYRGIRKRR-WGKWVSEIREPRK---KSRIWLGSFPVPEMAAKAYDVAAFCLRG 85 69****887.**********843...6*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 23.525 | 36 | 93 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.08E-21 | 36 | 95 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 9.6E-12 | 36 | 85 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.4E-37 | 36 | 99 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.5E-30 | 36 | 94 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.80E-30 | 37 | 94 | No hit | No description |
PRINTS | PR00367 | 2.4E-13 | 37 | 48 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.4E-13 | 75 | 95 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 187 aa Download sequence Send to blast |
MEQASYTEDD LNSSSTTTSE THQKHISKRG STRHAVYRGI RKRRWGKWVS EIREPRKKSR 60 IWLGSFPVPE MAAKAYDVAA FCLRGSKALL NFPDEVEDLP RPSTCTARDI QAAAAKAAYS 120 VVSWNKSEVS AEEGNGHSGD DFWGEIELPE LLNSGCQWNS CGWTFAADSA WLEGEAQQQQ 180 HYFLACL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 4e-18 | 34 | 95 | 12 | 74 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017630111.1 | 1e-139 | PREDICTED: ethylene-responsive transcription factor ERF023 | ||||
Swissprot | Q1ECI2 | 3e-61 | ERF23_ARATH; Ethylene-responsive transcription factor ERF023 | ||||
TrEMBL | A0A1U8JRQ3 | 1e-136 | A0A1U8JRQ3_GOSHI; ethylene-responsive transcription factor ERF023-like | ||||
STRING | Gorai.007G109400.1 | 1e-121 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7659 | 24 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01250.1 | 1e-62 | ERF family protein |
Publications ? help Back to Top | |||
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