PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Cotton_A_14373_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 313aa MW: 35677.6 Da PI: 4.7927 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64.8 | 1.8e-20 | 121 | 170 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +grW+AeIrdp++ r+r++lg+++taeeAa +++a+ +++g Cotton_A_14373_BGI-A2_v1.0 121 KYRGVRQRP-WGRWAAEIRDPTS---RTRVWLGTYDTAEEAALVYDRAAIRIKG 170 8********.**********965...4***********************9988 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 1.8E-37 | 121 | 187 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.9E-30 | 121 | 178 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.881 | 121 | 178 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.24E-21 | 121 | 178 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 8.86E-34 | 121 | 177 | No hit | No description |
Pfam | PF00847 | 3.8E-14 | 121 | 170 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.5E-11 | 122 | 133 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.5E-11 | 144 | 160 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0042991 | Biological Process | transcription factor import into nucleus | ||||
GO:0048825 | Biological Process | cotyledon development | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 313 aa Download sequence Send to blast |
MNPASPFPVK YTEHRTVTNK LVKPSSKWFP MESKAKAPKV VRVCITDGDA TDSSSDECDR 60 VRYQRVKRHV NEIRIQDCST ANFSKPPNKQ NRQVSNKSNH VNIRSKKQQQ QQQQCLSNGV 120 KYRGVRQRPW GRWAAEIRDP TSRTRVWLGT YDTAEEAALV YDRAAIRIKG PDALTNFSKP 180 PVRPPPEIEL EMISGYDSGQ ESQSLCSPTS VLTFQSNEEA ELQTESNDDS LDDMERGWRP 240 VEELTGEPSK LSDEYLLTDP GALCDYFNSD NPVPEPIFFD EMRLPEDSNL ELDISVKLDV 300 DFGSSTWDVD NYY |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 9e-22 | 117 | 183 | 1 | 65 | ATERF1 |
3gcc_A | 9e-22 | 117 | 183 | 1 | 65 | ATERF1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_017629995.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor CRF5-like | ||||
TrEMBL | A0A1U8JRM2 | 0.0 | A0A1U8JRM2_GOSHI; ethylene-responsive transcription factor CRF5-like | ||||
TrEMBL | A0A2P5W3B3 | 0.0 | A0A2P5W3B3_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.007G105700.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2578 | 25 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G46310.1 | 1e-56 | cytokinin response factor 5 |