PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_14372_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | ERF | ||||||||
Protein Properties | Length: 297aa MW: 33977.8 Da PI: 4.5543 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.4 | 4.1e-19 | 116 | 165 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y GVr+++ +grW+AeIrdp++ r+r++lg+++taeeAa +++a+ +++g Cotton_A_14372_BGI-A2_v1.0 116 KYLGVRQRP-WGRWAAEIRDPTS---RTRVWLGTYDTAEEAALVYDRAAIQIKG 165 799******.**********965...4**********************99887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 4.84E-21 | 116 | 173 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 2.6E-36 | 116 | 179 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.1E-12 | 116 | 165 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.8E-29 | 116 | 173 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 9.97E-33 | 116 | 173 | No hit | No description |
PROSITE profile | PS51032 | 22.879 | 116 | 173 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.7E-10 | 117 | 128 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.7E-10 | 139 | 155 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 297 aa Download sequence Send to blast |
MNPGSPLRVK YREQRTVTKK LVKPSSEWFC MESKAKAPKI VRICVTDEDA TDSSSDECEG 60 ETYHTVKRHV NEIRIQDCST VNFTKPTNHQ INNKSNHVDI RSKKQQQQQC LSVGVKYLGV 120 RQRPWGRWAA EIRDPTSRTR VWLGTYDTAE EAALVYDRAA IQIKGPDAVT NFAQPPLRPD 180 IDLDIISGYD CGQESQSLCS PTFVLRFQTN EEAELQIQSK DDSFEHGWKL EEDLPGQPTS 240 LSDEYLLTDT TVALCDYFNS DNPEPIFFDE MRLAEENISV KLDIDFGACT WEVDDYY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 4e-21 | 114 | 178 | 3 | 65 | ATERF1 |
3gcc_A | 4e-21 | 114 | 178 | 3 | 65 | ATERF1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017630222.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor CRF6-like | ||||
TrEMBL | A0A2P5W3J0 | 0.0 | A0A2P5W3J0_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.007G105600.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2578 | 25 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G61630.1 | 6e-48 | cytokinin response factor 6 |