PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_14367_BGI-A2_v1.0
Common NameF383_22799
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bZIP
Protein Properties Length: 381aa    MW: 41264.2 Da    PI: 6.8054
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_14367_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_172.36.9e-23262324163
                                 XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                      bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                                 e+elkrerrkq+NRe+ArrsR+RK+ae+eeL++kv++L++eN aL++e+++l+++++k++ e+
  Cotton_A_14367_BGI-A2_v1.0 262 ERELKRERRKQSNRESARRSRLRKQAETEELARKVESLTSENAALRSEINQLTEMSEKVRLEN 324
                                 89*******************************************************998876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077771.0E-33194IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165961.7E-18122241No hitNo description
Gene3DG3DSA:1.20.5.1702.1E-18256321No hitNo description
PfamPF001701.3E-20262324IPR004827Basic-leucine zipper domain
SMARTSM003388.4E-21262326IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.128264327IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.25E-11265318No hitNo description
CDDcd147021.37E-22267316No hitNo description
PROSITE patternPS000360269284IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MGNNDEGKSS KSDKSSSPVP TDQNNIHVYP DWAAMQAYYG PHVNMPPYYS SAVASGHAPP  60
AYMWGLTQPM MPPYGAPYAT IYSHGGVFAH PAVPLVLDIT SSILMQAAGP VETPVKSPGN  120
TEQGLMKKLK GFDGLAISIG NGTAKNAEGR AKPRPSHSVE TAGSTDGSDG NTTGTDQSRW  180
KRSREGTPTL VEDEKIEAKS YQVAAGEVTA TISPKPIGTV VSPGMTTGTI LELRNTPNKN  240
AMSSAMGVHC GVMPTEVWLQ NERELKRERR KQSNRESARR SRLRKQAETE ELARKVESLT  300
SENAALRSEI NQLTEMSEKV RLENAILVEE LKNAQLGHGQ ENVLNKKEDK EDEMCEKKSD  360
SGAKLHQLLD PSPRDDVVAA G
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1278284RRSRLRK
2278285RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter. G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. {ECO:0000269|PubMed:8672884}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017627587.10.0PREDICTED: G-box-binding factor 3-like isoform X3
SwissprotP427761e-118GBF3_ARATH; G-box-binding factor 3
TrEMBLA0A0B0NYG10.0A0A0B0NYG1_GOSAR; Common plant regulatory factor 1
STRINGGorai.007G105100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35712661
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46270.11e-101G-box binding factor 3
Publications ? help Back to Top
  1. Obayashi T, et al.
    ATTED-II: a database of co-expressed genes and cis elements for identifying co-regulated gene groups in Arabidopsis.
    Nucleic Acids Res., 2007. 35(Database issue): p. D863-9
    [PMID:17130150]
  2. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]
  3. Ramegowda V, et al.
    GBF3 transcription factor imparts drought tolerance in Arabidopsis thaliana.
    Sci Rep, 2017. 7(1): p. 9148
    [PMID:28831141]