PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_14318_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 213aa    MW: 24146.7 Da    PI: 9.029
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_14318_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.99e-142678155
                                CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                         HLH  1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                                ++ +hn+ Er RR+++N+ ++ Lr++lP++  ++ k+ls  +++ +  +YI +Lq
  Cotton_A_14318_BGI-A2_v1.0 26 KKLNHNASERVRRRKMNDLYSSLRSMLPPS--EQTKRLSIPATVSRMLKYIPELQ 78
                                6789*************************7..36666***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.99E-122482No hitNo description
SuperFamilySSF474596.94E-152492IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.2722577IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.9E-112678IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.5E-112691IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.7E-93183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MPRIQLDRPM LSAGDTGDEN PTTVDKKLNH NASERVRRRK MNDLYSSLRS MLPPSEQTKR  60
LSIPATVSRM LKYIPELQSQ VEILLQKKQQ ILSTICKQDD HDLINQHHQN KTKLLDGFKV  120
SPFTVSGTKV SDTEATIQIS TFGPTSQGIP PLSPILYGLE EDGLFLTDAS CFESFGGRVF  180
YNLNFQVETT YNLEAMLLLL NEKLLSLYKK RKA
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5858603e-48JX585860.1 Gossypium hirsutum clone NBRI_GE19536 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017630090.11e-155PREDICTED: transcription factor ORG2-like
TrEMBLA0A2P5R7S41e-146A0A2P5R7S4_GOSBA; Uncharacterized protein
STRINGGorai.007G353000.11e-145(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM48228153
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56970.12e-44bHLH family protein