PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_14294_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 248aa    MW: 28087.5 Da    PI: 8.6094
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_14294_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.31.5e-172572148
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
             Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                rg+WT+eEdell +++++ G g+W+t +++ g+ R++k+c++rw +yl
  Cotton_A_14294_BGI-A2_v1.0 25 RGPWTPEEDELLSNYINKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYL 72
                                89******************************99************97 PP
2Myb_DNA-binding47.54e-1583123648
                                 HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
             Myb_DNA-binding   6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                 ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l
  Cotton_A_14294_BGI-A2_v1.0  83 PDEEDLILRLHRLLGNR-WSLIAGRIP-GRTDNEIKNYWNTHL 123
                                 89***************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.9E-221674IPR009057Homeodomain-like
PROSITE profilePS5129416.5532072IPR017930Myb domain
SuperFamilySSF466893.56E-2922119IPR009057Homeodomain-like
SMARTSM007172.2E-132474IPR001005SANT/Myb domain
PfamPF002491.5E-152572IPR001005SANT/Myb domain
CDDcd001675.25E-112772No hitNo description
PROSITE profilePS5129424.39773127IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.1E-2475128IPR009057Homeodomain-like
SMARTSM007172.7E-1377125IPR001005SANT/Myb domain
PfamPF002496.7E-1483123IPR001005SANT/Myb domain
CDDcd001672.61E-1183123No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010090Biological Processtrichome morphogenesis
GO:0010468Biological Processregulation of gene expression
GO:0048354Biological Processmucilage biosynthetic process involved in seed coat development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MRNPTKKDNV GTKTTPCCSK VGLKRGPWTP EEDELLSNYI NKEGEGRWRT LPKRAGLLRC  60
GKSCRLRWMN YLRPSVKRGQ IAPDEEDLIL RLHRLLGNRW SLIAGRIPGR TDNEIKNYWN  120
THLSKKLISQ GIDPQTHKPL NPQQLSPSPP SLKPSPSSSS SMAKPNNPPS PLPVHVVNAN  180
KQNDYYDGSN EDHQGMIMNN DHYQQQQDHD DDVFSSFLNS LINEDDDALV SNLGLSQGWE  240
STPFDQPK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-25231275108B-MYB
1h8a_C1e-242312725128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3362780.0AF336278.1 Gossypium hirsutum BNLGHi233 (bnlghi6233) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017627407.10.0PREDICTED: transcription repressor MYB5-like
SwissprotQ388509e-89MYB5_ARATH; Transcription repressor MYB5
TrEMBLA0A0D2SPS80.0A0A0D2SPS8_GOSRA; Uncharacterized protein
STRINGGorai.007G350500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.11e-80myb domain protein 5
Publications ? help Back to Top
  1. Ranocha P,Francoz E,Burlat V,Dunand C
    Expression of PRX36, PMEI6 and SBT1.7 is controlled by complex transcription factor regulatory networks for proper seed coat mucilage extrusion.
    Plant Signal Behav, 2014. 9(11): p. e977734
    [PMID:25531128]