PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_14256_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | bZIP | ||||||||
Protein Properties | Length: 254aa MW: 28058.1 Da PI: 4.2537 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 49.6 | 8.3e-16 | 87 | 143 | 3 | 59 |
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevakl 59 lkr rrk +NRe+ArrsR+RK+++++eLe +++L +eN++L k+l + +++ + Cotton_A_14256_BGI-A2_v1.0 87 HLKRLRRKLSNRESARRSRKRKQEQLAELEFQAEQLRGENDSLFKQLTNAHQLIRDV 143 58******************************************9999988887665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 2.1E-11 | 84 | 136 | No hit | No description |
SMART | SM00338 | 4.0E-14 | 85 | 149 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 9.5E-13 | 87 | 140 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.955 | 87 | 133 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 5.34E-11 | 88 | 139 | No hit | No description |
CDD | cd14702 | 1.17E-17 | 90 | 138 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 92 | 107 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MYIYKLGNES WGSTVCEGNN SNYRSRENEV RGATTPSSDH DQSDDDDDDV EEEDDDDDDE 60 DEEGGEGEGE VEEADAGQSE QSLDPSHLKR LRRKLSNRES ARRSRKRKQE QLAELEFQAE 120 QLRGENDSLF KQLTNAHQLI RDVGTNNRVL TSNVQALRHK VKLAEDMLAG GSFTCGLNQL 180 VQSHLTSQQP IATNNHNLGR VVNVSPTITV QGDSSSYAGF TDMGNSPNLG LPTLDFTNSN 240 QNNIGIGGDA MSWP |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 87 | 94 | LKRLRRKL |
2 | 91 | 107 | RRKLSNRESARRSRKRK |
3 | 101 | 107 | RRSRKRK |
4 | 101 | 108 | RRSRKRKQ |
5 | 103 | 108 | SRKRKQ |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX964183 | 1e-118 | JX964183.1 Gossypium hirsutum clone NBRI_TRANS-452 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017643990.1 | 0.0 | PREDICTED: basic leucine zipper 9-like | ||||
TrEMBL | A0A0D2R6T7 | 1e-178 | A0A0D2R6T7_GOSRA; Uncharacterized protein | ||||
TrEMBL | A0A1U8PVH6 | 1e-176 | A0A1U8PVH6_GOSHI; uncharacterized protein LOC107963043 | ||||
STRING | Gorai.010G124200.1 | 1e-178 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6370 | 26 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G24800.1 | 8e-38 | basic leucine zipper 9 |