PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_14219_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family DBB
Protein Properties Length: 296aa    MW: 32178.8 Da    PI: 5.7004
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_14219_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box21.45.1e-07447542
                    zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                                 C+ +e  e++  C  ++  lC  C +++H        H++vpl
  Cotton_A_14219_BGI-A2_v1.0  4 QCNVCEAAEAKVLCCADEAALCWACDEKIHAAnklaskHQRVPL 47
                                6******99*********************66899999999986 PP
2zf-B_box28.62.8e-095294137
                    zf-B_box  1 seerkCpeHeekelqlfCedCqqllCedClleeHkg......H 37
                                s+++kC+ ++e    +fC +++ llC++C +++H        H
  Cotton_A_14219_BGI-A2_v1.0 52 SQMPKCDICQEASGFFFCLQDRALLCRKCDVAIHTAnpyvssH 94
                                689*********9*********************555556556 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.665147IPR000315B-box-type zinc finger
CDDcd000219.44E-9347No hitNo description
SMARTSM003369.5E-11447IPR000315B-box-type zinc finger
SMARTSM003364.7E-165299IPR000315B-box-type zinc finger
PROSITE profilePS501199.0725299IPR000315B-box-type zinc finger
PfamPF006436.9E-75394IPR000315B-box-type zinc finger
CDDcd000211.24E-85599No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009641Biological Processshade avoidance
GO:0009658Biological Processchloroplast organization
GO:0009718Biological Processanthocyanin-containing compound biosynthetic process
GO:0010099Biological Processregulation of photomorphogenesis
GO:0015995Biological Processchlorophyll biosynthetic process
GO:0016607Cellular Componentnuclear speck
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MRIQCNVCEA AEAKVLCCAD EAALCWACDE KIHAANKLAS KHQRVPLSSS SSQMPKCDIC  60
QEASGFFFCL QDRALLCRKC DVAIHTANPY VSSHQRFLLT GVKVGLETTD PGASSSNVKS  120
PSSEKTSETK TNSTSRRAAP MAFTGGYNEV LPSNLGDVNN ELMKVTYAGG STAGSIQSWQ  180
MDDIFGLTDF NQSYGYMDDG SSKADSGKRG DSDSSSILRS ADDEVDDDER LGQVPDSSWA  240
VPQVPSPPTA SGLYWPKDSR DQCDSVVFVP DISCSVMKNP FNSRRIGSDR KRRRHI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1289293RKRRR
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of seedling photomorphogenesis and light-regulated inhibition of hypocotyl elongation, independently and in concert with HY5 and BBX21 (PubMed:18540109, PubMed:18796637, PubMed:18182030, PubMed:21427283). Acts as a positive regulator of de-etiolation and influences chloroplast biogenesis and function through regulation of genes encoding chloroplast proteins (PubMed:18182030). Acts downstream of COP1 and plays an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). Regulates the expression of genes responsive to light hormone signals which may contribute to optimal seedling development (PubMed:21427283). {ECO:0000269|PubMed:18182030, ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:18796637, ECO:0000269|PubMed:21070414, ECO:0000269|PubMed:21427283}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. {ECO:0000269|PubMed:18182030}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017638947.10.0PREDICTED: B-box zinc finger protein 22
SwissprotQ9SYM21e-103BBX22_ARATH; B-box zinc finger protein 22
TrEMBLA0A1U8MQR70.0A0A1U8MQR7_GOSHI; B-box zinc finger protein 22-like
STRINGGorai.002G047200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56062849
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78600.11e-95light-regulated zinc finger protein 1