PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_14180_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

CPP

Protein Properties

Length: 587aa MW: 64083.9 Da PI: 8.0294

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_14180_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	39.6	1e-12	127	164	4	42
TCR 4 kgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 k+C Ck+skClk+YC+Cfa+g++C+ C+C dC+N+ e+ Cotton_A_14180_BGI-A2_v1.0 127 KQCGCKQSKCLKLYCDCFASGEYCNG-CTCADCCNNVEN 164 89**********************.******9875 PP
2	TCR	50.9	3.1e-16	210	247	2	39
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 +++gC+Ckks+Clk+YCeCf+a ++Cs++CkC dCkN Cotton_A_14180_BGI-A2_v1.0 210 HERGCHCKKSECLKRYCECFQASVFCSQNCKCVDCKNF 247 889**********************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01114	2.8E-10	124	164	IPR033467	Tesmin/TSO1-like CXC domain
PROSITE profile	PS51634	34.971	125	249	IPR005172	CRC domain
Pfam	PF03638	2.8E-9	127	161	IPR005172	CRC domain
SMART	SM01114	1.3E-16	209	250	IPR033467	Tesmin/TSO1-like CXC domain
Pfam	PF03638	5.4E-13	212	247	IPR005172	CRC domain

Sequence ? help Back to Top
Protein Sequence Length: 587 aa Download sequence Send to blast
MKQLEIENGD FPPKRVELVT LTSTPYYQPK GIKSVEKTSD SVKITVTERS SSHFPPKKNL 60 ARQLVFTEFG LSPIISTSSP LPVEKPSSEM HLSPRSPFSS ISKSSDSPIP VPWANIKANN 120 GTPKGPKQCG CKQSKCLKLY CDCFASGEYC NGCTCADCCN NVENEDLRKA AIEIILERNP 180 RAFKPKISSS PCSPQDIEGD KIDSPQVGRH ERGCHCKKSE CLKRYCECFQ ASVFCSQNCK 240 CVDCKNFEAC KELITASCKE DSTSIICKNS EGCYGRIASS HMDNASRKLY KSFKGSEGLM 300 AITGGDCIDT KIYIQQVITT TTSDATGLSG QRLSQESRKR KLQELPSNEK ISPSQSFSDL 360 QKVIRQRSSC PSSTLSVDPT CHIINSAMVG SLRDPYRLTV ANVYHLLDTS KVCSGLAVLA 420 EAAALAQAAN LFAEVKDGEE NKNGDILGAK EDDYQERPAQ VQKRAADDLN LGFAAKDVQE 480 GRASLPGMVG LICNEKHKQL MEPTSGDQIL NRNLKNAYAE QESASMICKN SEGRDGRIAN 540 TQMGNAENRN RSLAQLDAEL LAAVIILKLM IKKNVGTFIC AGITGLN

Sequence ? help Back to Top

Protein Sequence Length: 587 aa Download sequence Send to blast

MKQLEIENGD FPPKRVELVT LTSTPYYQPK GIKSVEKTSD SVKITVTERS SSHFPPKKNL  60
ARQLVFTEFG LSPIISTSSP LPVEKPSSEM HLSPRSPFSS ISKSSDSPIP VPWANIKANN  120
GTPKGPKQCG CKQSKCLKLY CDCFASGEYC NGCTCADCCN NVENEDLRKA AIEIILERNP  180
RAFKPKISSS PCSPQDIEGD KIDSPQVGRH ERGCHCKKSE CLKRYCECFQ ASVFCSQNCK  240
CVDCKNFEAC KELITASCKE DSTSIICKNS EGCYGRIASS HMDNASRKLY KSFKGSEGLM  300
AITGGDCIDT KIYIQQVITT TTSDATGLSG QRLSQESRKR KLQELPSNEK ISPSQSFSDL  360
QKVIRQRSSC PSSTLSVDPT CHIINSAMVG SLRDPYRLTV ANVYHLLDTS KVCSGLAVLA  420
EAAALAQAAN LFAEVKDGEE NKNGDILGAK EDDYQERPAQ VQKRAADDLN LGFAAKDVQE  480
GRASLPGMVG LICNEKHKQL MEPTSGDQIL NRNLKNAYAE QESASMICKN SEGRDGRIAN  540
TQMGNAENRN RSLAQLDAEL LAAVIILKLM IKKNVGTFIC AGITGLN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5fd3_A	3e-26	127	248	12	122	Protein lin-54 homolog
5fd3_B	3e-26	127	248	12	122	Protein lin-54 homolog
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017639890.1	0.0	PREDICTED: protein tesmin/TSO1-like CXC 6
TrEMBL	A0A2P5YB90	0.0	A0A2P5YB90_GOSBA; Uncharacterized protein
STRING	Gorai.011G074200.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM22196	4	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29000.1	6e-61	Tesmin/TSO1-like CXC domain-containing protein