PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_14093_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 487aa    MW: 55405 Da    PI: 6.0457
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_14093_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM128.74.5e-4061302128
                         NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgy 82 
                                   GfrF P dee+++++Lkkk+ g++  + + i+evd++k+ePw+Lp +  v+++  ew fF k +k ++  +++ r+t++gy
  Cotton_A_14093_BGI-A2_v1.0   6 EIGFRFLPPDEEIISFFLKKKIMGDHKAT-RYIREVDLLKHEPWQLPaMsVVQSTYPEWLFFYKLNKISQ--RKNDRSTNDGY 85 
                                 68***********************9776.89***************5334555555**99999988764..58889****** PP

                         NAM  83 WkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                                 Wk+tg d+++++ +++++g+kktLvfykgr+p+g +tdWvmhe+r+
  Cotton_A_14093_BGI-A2_v1.0  86 WKSTGADRPITC-GDSVIGTKKTLVFYKGRTPNGLRTDWVMHEFRA 130
                                 ************.999****************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.48E-414136IPR003441NAC domain
PROSITE profilePS5100542.2825151IPR003441NAC domain
PfamPF023651.9E-197129IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 487 aa     Download sequence    Send to blast
MDNVLEIGFR FLPPDEEIIS FFLKKKIMGD HKATRYIREV DLLKHEPWQL PAMSVVQSTY  60
PEWLFFYKLN KISQRKNDRS TNDGYWKSTG ADRPITCGDS VIGTKKTLVF YKGRTPNGLR  120
TDWVMHEFRA TAGSLPPNAD NSYVVGYLRD NAAEKNEYLI SNVGQQCPRF SASSSPDNAV  180
GATSMESNSM DSDIALLKFM EEEGMFDSDL SPSRGLHSFP SSSAIFNNDQ SRIEEERFSL  240
EDFDYQQSDD LVEGQFVYTI DDEMEFYDAL FHNPDERTNA EAEYRDNAWH DQIVHMSDGT  300
CHGHSEGLNQ RRMETGVHHD EVLIMDSGVE SATVTAYEIN CLELVQEERS VNSRACKSEY  360
EPIFHKSAML RHPRRVRLQD KSLGKAVSRD KTRESGIRGP AVQPVQDKKS ILQANKGPKM  420
DRDRNTKLIL NSRSKGSSGS SRKNSFNFVE MSQLSCKADP PLRFGFHDLT LALVLQPMKP  480
VKSQDNK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-27512915139Stress-induced transcription factor NAC1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC8472500.0KC847250.1 Gossypium hirsutum NAC domain protein NAC73 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017612894.10.0PREDICTED: NAC domain-containing protein 30-like
TrEMBLA0A1U8MIC10.0A0A1U8MIC1_GOSHI; NAC domain-containing protein 30-like
STRINGGorai.001G150000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2219545
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.12e-42NAC transcription factor-like 9