PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_14075_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 1245aa MW: 138057 Da PI: 9.8344

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_14075_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	48.8	1.2e-15	1052	1099	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + hn ErrRRd+iN+++ L+el+P++ K++Ka++L +A+eY+k Lq Cotton_A_14075_BGI-A2_v1.0 1052 EVHNLSERRRRDKINKKMRALKELIPNC-----NKVDKASMLDEAIEYLKTLQ 1099 57***********************8.....6****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	5.8E-20	1046	1106	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.58E-20	1046	1111	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.67E-16	1047	1103	No hit	No description
PROSITE profile	PS50888	18.438	1049	1098	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.5E-13	1052	1099	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.3E-17	1055	1104	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007126	Biological Process	meiotic nuclear division
GO:0005694	Cellular Component	chromosome
GO:0005730	Cellular Component	nucleolus
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 1245 aa Download sequence Send to blast
MSDYRSLGSN FHSSSQSRKI SIGVILDSLV ERKLGDIKED ECKQSNTERI KPDNGIYAEG 60 KNKGEAATTP KRKQTEHAEQ VKSPWITPRK SLAARTASSN LGQKKHKKAK DVSVTYSVQF 120 FSNKTFNAQN ARSKQNSFDS FIDDLTYKRK ERNDGNSQKV EFNLADAGKV PESDKLVLES 180 KANKTQNKPT ETLKMKLQEL LGNVSSPESQ LSRSQDQEAD ANNLTPQISV DHMGHTVVKP 240 RQSSDTIETD SENPDQIIKR PVTNSLTRKR APAKVQTNKT KVGLSSKQKH RERFVSFREG 300 RSTKLDGAVN TASKLSRKKK IQKKSSKIDS RKICFAEEGN VDEIKQTSYR SETPVPAGKT 360 SVLGNKMENS LSFFSEKRRE NFERVQENHF FSSPVTNKNQ PANFENPTSP EKGDKQEDFG 420 NISLWNVVNT QDNFPSPTFG FRTPILNTSP SPTPKTMERE QVVCSPVPSE RGFITGNIRS 480 FRNFQVSRPV CNKSTAQAHS PVSLTIFQDS DMGIEHVKRY AHSKPSSEER LSESFEDFSP 540 TIKRYNCHTE NPISLDTGVF EKPNFNRCPI KRISECTPTT ASQKVVSSLF FSQGARIGES 600 VRFHEPLEQD QEDELTRAVT LFASALETFK RKMDSTTSKK SSEILVSISE EINSLLLNAQ 660 SEIEYDVGKL TSLNKTKKKR LETRLQEQQE QLKLILQNFK EDIHQLLLDC NSILEGMEAH 720 QIELKGIMKK QKVSHQKLLM DVKAAAEIQL NNAERRITSV HEALSKGKDA PAETCNSRVL 780 DRQRDPDFME LVWENGQVLI RGLSSKVTQK SFPFSSRSTA NGSKDGGVAD STFAHPISGL 840 SSLSKLDRHG VDANIVPVNN SNRLKPSYVP NQLVEDEVPC SSLQQFKGSK EEKDGVNFSI 900 LRSNHASSGA MRTPGLAAGA EDLQGNNVRS APPRSSNIPF GNEGDFMAKR MRPTLPDSEP 960 LKESFPDEQS EAVPNARLAP DDTAFKGNPD QMVASSSLCS RGASNCPTYT LKRRYEDTDL 1020 SKNTTMEEAE GTTKAAPVPR GSKGAKRKRK TEVHNLSERR RRDKINKKMR ALKELIPNCN 1080 KVDKASMLDE AIEYLKTLQL QVQMMSIGNG VYMPPMMVPL PSAMQHINAQ HLGGYSPMAL 1140 GMGMRTQMGL GCGAPPQFPT SLMTGAPAVP GNPEARLIML GFPDQMLLRS MSHSPFLSSA 1200 ASFTPQSFQP PAAVVSQSAA PPAAQVDLLG GANPLSTSKD SYPTH

Sequence ? help Back to Top

Protein Sequence Length: 1245 aa Download sequence Send to blast

MSDYRSLGSN FHSSSQSRKI SIGVILDSLV ERKLGDIKED ECKQSNTERI KPDNGIYAEG  60
KNKGEAATTP KRKQTEHAEQ VKSPWITPRK SLAARTASSN LGQKKHKKAK DVSVTYSVQF  120
FSNKTFNAQN ARSKQNSFDS FIDDLTYKRK ERNDGNSQKV EFNLADAGKV PESDKLVLES  180
KANKTQNKPT ETLKMKLQEL LGNVSSPESQ LSRSQDQEAD ANNLTPQISV DHMGHTVVKP  240
RQSSDTIETD SENPDQIIKR PVTNSLTRKR APAKVQTNKT KVGLSSKQKH RERFVSFREG  300
RSTKLDGAVN TASKLSRKKK IQKKSSKIDS RKICFAEEGN VDEIKQTSYR SETPVPAGKT  360
SVLGNKMENS LSFFSEKRRE NFERVQENHF FSSPVTNKNQ PANFENPTSP EKGDKQEDFG  420
NISLWNVVNT QDNFPSPTFG FRTPILNTSP SPTPKTMERE QVVCSPVPSE RGFITGNIRS  480
FRNFQVSRPV CNKSTAQAHS PVSLTIFQDS DMGIEHVKRY AHSKPSSEER LSESFEDFSP  540
TIKRYNCHTE NPISLDTGVF EKPNFNRCPI KRISECTPTT ASQKVVSSLF FSQGARIGES  600
VRFHEPLEQD QEDELTRAVT LFASALETFK RKMDSTTSKK SSEILVSISE EINSLLLNAQ  660
SEIEYDVGKL TSLNKTKKKR LETRLQEQQE QLKLILQNFK EDIHQLLLDC NSILEGMEAH  720
QIELKGIMKK QKVSHQKLLM DVKAAAEIQL NNAERRITSV HEALSKGKDA PAETCNSRVL  780
DRQRDPDFME LVWENGQVLI RGLSSKVTQK SFPFSSRSTA NGSKDGGVAD STFAHPISGL  840
SSLSKLDRHG VDANIVPVNN SNRLKPSYVP NQLVEDEVPC SSLQQFKGSK EEKDGVNFSI  900
LRSNHASSGA MRTPGLAAGA EDLQGNNVRS APPRSSNIPF GNEGDFMAKR MRPTLPDSEP  960
LKESFPDEQS EAVPNARLAP DDTAFKGNPD QMVASSSLCS RGASNCPTYT LKRRYEDTDL  1020
SKNTTMEEAE GTTKAAPVPR GSKGAKRKRK TEVHNLSERR RRDKINKKMR ALKELIPNCN  1080
KVDKASMLDE AIEYLKTLQL QVQMMSIGNG VYMPPMMVPL PSAMQHINAQ HLGGYSPMAL  1140
GMGMRTQMGL GCGAPPQFPT SLMTGAPAVP GNPEARLIML GFPDQMLLRS MSHSPFLSSA  1200
ASFTPQSFQP PAAVVSQSAA PPAAQVDLLG GANPLSTSKD SYPTH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	1047	1061	KRKTEVHNLSERRRR
2	1057	1062	ERRRRD
3	1058	1063	RRRRDK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017613367.1	0.0	PREDICTED: uncharacterized protein LOC108458465 isoform X1
TrEMBL	A0A0B0PIT8	0.0	A0A0B0PIT8_GOSAR; Uncharacterized protein
STRING	Gorai.001G148200.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09530.2	3e-40	phytochrome interacting factor 3