PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_14073_BGI-A2_v1.0
Common NameF383_02323
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WRKY
Protein Properties Length: 531aa    MW: 57652.1 Da    PI: 6.9578
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_14073_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.96.6e-31278336259
                                 --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                                 +Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+a+d++++++tYeg+Hnh+
  Cotton_A_14073_BGI-A2_v1.0 278 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAvGCPVRKQVQRCADDKSILITTYEGNHNHP 336
                                 7*********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.0E-33262338IPR003657WRKY domain
SuperFamilySSF1182904.71E-28270338IPR003657WRKY domain
PROSITE profilePS5081129.964272338IPR003657WRKY domain
SMARTSM007741.6E-37277337IPR003657WRKY domain
PfamPF031064.8E-27279336IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 531 aa     Download sequence    Send to blast
MEKQHSRELT FLHSGDSLRP NSGVADRTLG DSSDHVEPHI KEMDFFSTQY QSHDHHHHHH  60
HHHQEGNTDN NGSSSFIDSS VNIGLNLLSS SPGVSRATNE EKHKAQESAL KMELEKLNEE  120
NRRLRSMLDQ ITKNYNELQG QLLMALQKQA HRNEQEQKDA VNGMASTIMS VQQFMDPRPS  180
SALDVNEPSG SDDKTQELSA SPENTMEIVS KEYDHRMVQN MPGKQVSIED STDQTSQNWG  240
SLKSPKVDQS KNEDQVSEVP FRKARVSVRA RSEAPLISDG CQWRKYGQKM AKGNPCPRAY  300
YRCTMAVGCP VRKQVQRCAD DKSILITTYE GNHNHPLPPA ATAMANTTSA AAAMLLSGST  360
KSKDGLPTSA YYPSLPYASS MATLSASAPF PTITLDLTQG PNAVQMLRPP PSATSFPLPL  420
HGYPQLLGNP MFGPPKLSTA SPALQLGQRP ASMVETVTAA IASDPNFTAA LAAAISTIMG  480
APPRNQGNSS NNNDENNNSS NGVGVPALPG SPQIQQSCTT FSSKACTNKP G
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A5e-21264340176WRKY transcription factor 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00115ampDAPTransfer from AT4G01720Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF6698210.0KF669821.1 Gossypium hirsutum WRKY transcription factor 6 (WRKY6) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017613399.10.0PREDICTED: probable WRKY transcription factor 47
TrEMBLA0A0B0NVU80.0A0A0B0NVU8_GOSAR; Putative WRKY transcription factor 42-like protein
STRINGGorai.001G147900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM71562743
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04450.17e-69WRKY family protein