PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_14044_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | MYB | ||||||||
Protein Properties | Length: 163aa MW: 18762 Da PI: 6.5191 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.7 | 9.7e-17 | 15 | 55 | 1 | 41 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqck 41 rg+WT+eEd++l+++v+ +G+++Wk++a++ g++R++k+c+ Cotton_A_14044_BGI-A2_v1.0 15 RGAWTAEEDQKLAQVVEIHGPKRWKAVAAKAGLNRCGKSCR 55 89**************************************8 PP | |||||||
2 | Myb_DNA-binding | 28.1 | 4.7e-09 | 55 | 79 | 23 | 48 |
-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqkyl 48 +W++Ia +++ gRt++++k++w+++l Cotton_A_14044_BGI-A2_v1.0 55 RWSLIAGRLP-GRTDNEIKNYWNSHL 79 5*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 5.3E-16 | 6 | 55 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 20.271 | 10 | 83 | IPR017930 | Myb domain |
SMART | SM00717 | 3.1E-16 | 14 | 81 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 3.82E-17 | 15 | 79 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.2E-15 | 15 | 55 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.34E-11 | 17 | 79 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.1E-12 | 56 | 87 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 163 aa Download sequence Send to blast |
MAPTSTKCSK KEVNRGAWTA EEDQKLAQVV EIHGPKRWKA VAAKAGLNRC GKSCRWSLIA 60 GRLPGRTDNE IKNYWNSHLS KKIKQNEKQT RMQEPVLENS KVSEREEPLH KASEEGSSKR 120 DEEYSTSCFN GDSSLFDLYN EEPLELEWMS HFFETDEIWL NLA |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX582297 | 2e-64 | JX582297.1 Gossypium hirsutum clone NBRI_GE15106 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016753002.1 | 1e-111 | PREDICTED: transcription factor MYB114-like | ||||
Refseq | XP_017646585.1 | 1e-111 | PREDICTED: transcription factor MYB114-like | ||||
TrEMBL | A0A1U8PPB7 | 1e-110 | A0A1U8PPB7_GOSHI; transcription factor MYB114-like | ||||
TrEMBL | A0A2P5WPG5 | 1e-110 | A0A2P5WPG5_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.009G040800.1 | 1e-109 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28110.1 | 8e-27 | myb domain protein 41 |