PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_14044_BGI-A2_v1.0
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 163aa    MW: 18762 Da    PI: 6.5191
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_14044_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.79.7e-171555141
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHH CS
             Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqck 41
                                rg+WT+eEd++l+++v+ +G+++Wk++a++ g++R++k+c+
  Cotton_A_14044_BGI-A2_v1.0 15 RGAWTAEEDQKLAQVVEIHGPKRWKAVAAKAGLNRCGKSCR 55
                                89**************************************8 PP

2Myb_DNA-binding28.14.7e-0955792348
                                -HHHHHHHHTTTS-HHHHHHHHHHHT CS
             Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqkyl 48
                                +W++Ia +++ gRt++++k++w+++l
  Cotton_A_14044_BGI-A2_v1.0 55 RWSLIAGRLP-GRTDNEIKNYWNSHL 79
                                5*********.************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.3E-16655IPR009057Homeodomain-like
PROSITE profilePS5129420.2711083IPR017930Myb domain
SMARTSM007173.1E-161481IPR001005SANT/Myb domain
SuperFamilySSF466893.82E-171579IPR009057Homeodomain-like
PfamPF002492.2E-151555IPR001005SANT/Myb domain
CDDcd001677.34E-111779No hitNo description
Gene3DG3DSA:1.10.10.601.1E-125687IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MAPTSTKCSK KEVNRGAWTA EEDQKLAQVV EIHGPKRWKA VAAKAGLNRC GKSCRWSLIA  60
GRLPGRTDNE IKNYWNSHLS KKIKQNEKQT RMQEPVLENS KVSEREEPLH KASEEGSSKR  120
DEEYSTSCFN GDSSLFDLYN EEPLELEWMS HFFETDEIWL NLA
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5822972e-64JX582297.1 Gossypium hirsutum clone NBRI_GE15106 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016753002.11e-111PREDICTED: transcription factor MYB114-like
RefseqXP_017646585.11e-111PREDICTED: transcription factor MYB114-like
TrEMBLA0A1U8PPB71e-110A0A1U8PPB7_GOSHI; transcription factor MYB114-like
TrEMBLA0A2P5WPG51e-110A0A2P5WPG5_GOSBA; Uncharacterized protein
STRINGGorai.009G040800.11e-109(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28110.18e-27myb domain protein 41