PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_13980_BGI-A2_v1.0
Common NameF383_33219
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family LBD
Protein Properties Length: 252aa    MW: 27722.3 Da    PI: 7.6082
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_13980_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260126.61.2e-39421431101
                      DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilk 82 
                                 +C aCk+lrrkC+++C++ap+f ++q ++kfa+vhk+FGasnv+kll ++p ++r+da+ ++ yeA+ar++dPvyG+v++il+
  Cotton_A_13980_BGI-A2_v1.0  42 PCGACKFLRRKCVSGCIFAPHFGSDQgAAKFAAVHKVFGASNVSKLLLHIPMNRRHDAVVTISYEAQARLSDPVYGCVSTILS 124
                                 7***********************9989******************************************************* PP

                      DUF260  83 lqqqleqlkaelallkeel 101
                                 lqqq+++l+ael++++++l
  Cotton_A_13980_BGI-A2_v1.0 125 LQQQVASLQAELVMVQNQL 143
                                 ***************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.12141143IPR004883Lateral organ boundaries, LOB
PfamPF031957.9E-3942140IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:1900150Biological Processregulation of defense response to fungus
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MADPQCHGLS ETCRKGVGKR TTMPVEAKPV VVSEVAPIPI APCGACKFLR RKCVSGCIFA  60
PHFGSDQGAA KFAAVHKVFG ASNVSKLLLH IPMNRRHDAV VTISYEAQAR LSDPVYGCVS  120
TILSLQQQVA SLQAELVMVQ NQLINSRFAM ANALQSSQQQ QQHHQHHHQQ QQQQHLALLQ  180
PAYSNNSSAS NNLINISNFA SNFDLVAETT TAPNSSQSMD HLQLSRPCHD DEDDEQDSRI  240
QPVFVNQIIH RT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A8e-374114910115LOB family transfactor Ramosa2.1
5ly0_B8e-374114910115LOB family transfactor Ramosa2.1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017614798.10.0PREDICTED: LOB domain-containing protein 20
SwissprotQ9SRV34e-74LBD20_ARATH; LOB domain-containing protein 20
TrEMBLA0A0B0PPH20.0A0A0B0PPH2_GOSAR; LOB domain-containing 20-like protein
STRINGGorai.007G346200.11e-156(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10828359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03760.11e-62LOB domain-containing protein 20