PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_13945_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

HB-other

Protein Properties

Length: 1010aa MW: 111069 Da PI: 8.6481

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_13945_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	21.2	4.9e-07	69	125	1	57
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +r+R ++++ ++ ++++F + ++++e +e++++ g+t +qV+ +F +R++ +k Cotton_A_13945_BGI-A2_v1.0 69 KRPRDLLNPKAVKYMQAVFSIKDAITKKESREISAQFGVTVTQVRDFFNSQRTRVRK 125 799***************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	10.511	66	126	IPR001356	Homeobox domain
SuperFamily	SSF46689	9.41E-7	68	131	IPR009057	Homeodomain-like
SMART	SM00389	4.9E-5	68	130	IPR001356	Homeobox domain
Pfam	PF00046	2.0E-4	69	125	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.6E-7	69	136	IPR009057	Homeodomain-like
CDD	cd00086	1.12E-5	69	126	No hit	No description
Gene3D	G3DSA:1.20.930.10	4.0E-5	226	318	IPR017923	Transcription factor IIS, N-terminal
SuperFamily	SSF47676	3.4E-5	227	317	IPR017923	Transcription factor IIS, N-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006351	Biological Process	transcription, DNA-templated
GO:0009911	Biological Process	positive regulation of flower development
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1010 aa Download sequence Send to blast
MDVLKENLAE LEIGSTVESI QKFIDIQREL FHSQIDQLQN VVVTQCKLTG VNPLAQEMAA 60 GALSIKIGKR PRDLLNPKAV KYMQAVFSIK DAITKKESRE ISAQFGVTVT QVRDFFNSQR 120 TRVRKQVRLS REKALRSNAC EEAEDWVLPT GSEAVIPVEP VPLNSVGPVI SEEAPSCLTQ 180 DDSLTGIDEL DKHFVENIFS KMHKEETFSG QVKLMEWILQ IQNPSVLYWF LNKGGVMILA 240 TWLSQAAVEE QTTVVLIILK VLSHLPLQKA LPEHMSAILQ SVNKLCLYRF SDISNRARLL 300 ISRWSKMFAR SQAAKKPNGL RSSTETQNEI ISEIMGDGSW QSNVYNSDGT LATSNVRKES 360 PQVLKLLPAS MDDSAKKNLL GVSSSRILRS ALASPDSRER RRVQLVEQPG QKVAGKNSQT 420 TRTVPISQSR PMSADDIQKA KMRALYMQSR HGKTGSSSNG MNEVKSEGLN KSSPSKASFS 480 RPVSKVPSHP AEEQKKPVVL PPKTSSRVET SLDPKQPVAS KESPWEKCQK VKIPWHIPPE 540 VKINDLWSVG AGESSKEVHV QKNRNRRERE TFYYTNQEIP SNPKEPWDRE MDHDDSLTPE 600 IPTEQPPDNE TETQVTHGEH VNGAATLEPS TSQTGGAVSA EPDLELLAVL LKNPALVFAL 660 TSGQAGNLTS EETVKLLDMI KAGGADTGKN VEEKVEVSLP SPTPSANPGT SGWRPEAARN 720 PFSQHSQMGN RVAQASVGVV TPIPVAERLS ATGMAAPQEE ANGLSLAQQL AAAMAELLPQ 780 SNATTLDKRH SPNVAFSNRG HPSNLPASDI VLTMKNPSLV NSLTNSSAAA GPSMWVETMD 840 GKTAAMSMAP HIPEKVHSSF SPSPLMPTLT QRQTPAQLQP QVPHASDPYS TRPPVGNLDP 900 MPDPWRGRQK TRTDREIDGV TEDDDEAGLL PISAFGFRIP GFSSTVGVFY NDKKYLVGVC 960 GKWKPNGTSG TSLYAGHYKC NCSFLDVQFD KQHEKKQKRK EKKLPVYFRD

Sequence ? help Back to Top

Protein Sequence Length: 1010 aa Download sequence Send to blast

MDVLKENLAE LEIGSTVESI QKFIDIQREL FHSQIDQLQN VVVTQCKLTG VNPLAQEMAA  60
GALSIKIGKR PRDLLNPKAV KYMQAVFSIK DAITKKESRE ISAQFGVTVT QVRDFFNSQR  120
TRVRKQVRLS REKALRSNAC EEAEDWVLPT GSEAVIPVEP VPLNSVGPVI SEEAPSCLTQ  180
DDSLTGIDEL DKHFVENIFS KMHKEETFSG QVKLMEWILQ IQNPSVLYWF LNKGGVMILA  240
TWLSQAAVEE QTTVVLIILK VLSHLPLQKA LPEHMSAILQ SVNKLCLYRF SDISNRARLL  300
ISRWSKMFAR SQAAKKPNGL RSSTETQNEI ISEIMGDGSW QSNVYNSDGT LATSNVRKES  360
PQVLKLLPAS MDDSAKKNLL GVSSSRILRS ALASPDSRER RRVQLVEQPG QKVAGKNSQT  420
TRTVPISQSR PMSADDIQKA KMRALYMQSR HGKTGSSSNG MNEVKSEGLN KSSPSKASFS  480
RPVSKVPSHP AEEQKKPVVL PPKTSSRVET SLDPKQPVAS KESPWEKCQK VKIPWHIPPE  540
VKINDLWSVG AGESSKEVHV QKNRNRRERE TFYYTNQEIP SNPKEPWDRE MDHDDSLTPE  600
IPTEQPPDNE TETQVTHGEH VNGAATLEPS TSQTGGAVSA EPDLELLAVL LKNPALVFAL  660
TSGQAGNLTS EETVKLLDMI KAGGADTGKN VEEKVEVSLP SPTPSANPGT SGWRPEAARN  720
PFSQHSQMGN RVAQASVGVV TPIPVAERLS ATGMAAPQEE ANGLSLAQQL AAAMAELLPQ  780
SNATTLDKRH SPNVAFSNRG HPSNLPASDI VLTMKNPSLV NSLTNSSAAA GPSMWVETMD  840
GKTAAMSMAP HIPEKVHSSF SPSPLMPTLT QRQTPAQLQP QVPHASDPYS TRPPVGNLDP  900
MPDPWRGRQK TRTDREIDGV TEDDDEAGLL PISAFGFRIP GFSSTVGVFY NDKKYLVGVC  960
GKWKPNGTSG TSLYAGHYKC NCSFLDVQFD KQHEKKQKRK EKKLPVYFRD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	994	1002	KKQKRKEKK

Functional Description ? help Back to Top
Source	Description
UniProt	Seems to play a role in the regulation of flowering time in the autonomous flowering pathway by repressing FLOWERING LOCUS C expression. {ECO:0000269\|PubMed:10363371}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017615515.1	0.0	PREDICTED: homeobox protein LUMINIDEPENDENS
Swissprot	Q38796	1e-171	LUMI_ARATH; Homeobox protein LUMINIDEPENDENS
TrEMBL	A0A0B0NNT5	0.0	A0A0B0NNT5_GOSAR; Homeobox LUMINIDEPENDENS-like protein
STRING	Gorai.004G088100.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10876	24	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02560.2	1e-172	HB-other family protein

Publications ? help Back to Top
Chakrabortee S, et al. Luminidependens (LD) is an Arabidopsis protein with prion behavior. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(21): p. 6065-70 [PMID:27114519]