PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_13930_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C3H
Protein Properties Length: 472aa    MW: 50733 Da    PI: 8.5844
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_13930_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.41.8e-115076127
                                --S---SGGGGTS--TTTTT-SS-SSS CS
                     zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                                ++ + C +++rtG+C yG+rC+++H++
  Cotton_A_13930_BGI-A2_v1.0 50 PGVPDCVYYMRTGFCGYGNRCRYNHPR 76
                                57899********************96 PP
2zf-CCCH40.15.9e-1395121127
                                 --S---SGGGGTS--TTTTT-SS-SSS CS
                     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                                 ++++ C+f+++tGtCk+G++CkF+H++
  Cotton_A_13930_BGI-A2_v1.0  95 PGEPACQFYLKTGTCKFGASCKFHHPK 121
                                 57899********************96 PP
3zf-CCCH37.73.5e-12142167227
                                 -S---SGGGGTS--TTTTT-SS-SSS CS
                     zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                                 ++++C+++++tG+Ck+G +CkF+H++
  Cotton_A_13930_BGI-A2_v1.0 142 GEKECSYYLKTGQCKFGVTCKFHHPQ 167
                                 7899********************97 PP
4zf-CCCH35.91.3e-11298324127
                                 --S---SGGGGTS--TTTTT-SS-SSS CS
                     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                                 +++++C++++rtG Ck+G++C+++H++
  Cotton_A_13930_BGI-A2_v1.0 298 PGEPECQYYLRTGNCKFGSSCRYHHPR 324
                                 5799*********************96 PP
5zf-CCCH34.34.1e-11345369226
                                 -S---SGGGGTS--TTTTT-SS-SS CS
                     zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                                 +  +C f++++G+Ck+G++CkF H+
  Cotton_A_13930_BGI-A2_v1.0 345 GVQPCAFYLQNGHCKFGSTCKFDHP 369
                                 6789********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003567.7E-74976IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.3144977IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-85176IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-65477IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-45576IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.01494122IPR000571Zinc finger, CCCH-type
SMARTSM003563.4E-794121IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-1096121IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.02E-698122IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.4E-4100121IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.68140168IPR000571Zinc finger, CCCH-type
SMARTSM003564.1E-5140167IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-9142167IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.67E-6143168IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.8E-4146166IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-6297324IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.408297325IPR000571Zinc finger, CCCH-type
PfamPF006423.6E-9299324IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.66E-6301326IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-4303324IPR000571Zinc finger, CCCH-type
SMARTSM003569.4E-6343370IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.347343371IPR000571Zinc finger, CCCH-type
PfamPF006428.7E-9345369IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-6345374IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-5347369IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 472 aa     Download sequence    Send to blast
MELYGQNPAR NGSFSGHQLE WIPAGPETGG LEESMWQLSL RGTESYPERP GVPDCVYYMR  60
TGFCGYGNRC RYNHPRNRAA VEAAVRATGE YPERPGEPAC QFYLKTGTCK FGASCKFHHP  120
KHRGGSFGHV PLNIYGYPLQ PGEKECSYYL KTGQCKFGVT CKFHHPQPAG TSMPASAPQF  180
YQPVQSPSVP LPEQYGGAPT SVRVARPPLL PGSYVQGAYG PVLFSPGVVP IPGWSHYSAP  240
VSPALSPGAQ PAVGATSLYG LTQLSSSAPS LAGPYSSLPS STGPSSSNQK EQTFPERPGE  300
PECQYYLRTG NCKFGSSCRY HHPRDKVVQQ TNCILSPMGL PLRPGVQPCA FYLQNGHCKF  360
GSTCKFDHPI GTMRYSPSAS SLIDIPVAPY PFGSLLATLA PSSSSSELRP EMISRSKDSY  420
LSRISSSAST ASSSVGLIFS QTGSVHFSDL QLSSQSLSSS RSTIQGAEVH SN
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150411e-67AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017612864.10.0PREDICTED: zinc finger CCCH domain-containing protein 32-like isoform X1
SwissprotQ84W910.0C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLA0A1U8NKZ20.0A0A1U8NKZ2_GOSHI; zinc finger CCCH domain-containing protein 32-like isoform X1
STRINGGorai.004G086700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59122647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.30.0C3H family protein