PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_13877_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | NF-YB | ||||||||
Protein Properties | Length: 153aa MW: 17587.8 Da PI: 6.5345 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 47.7 | 3.7e-15 | 8 | 103 | 5 | 95 |
NF-YB 5 drflPianvsrimkkvlPa.....nakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyvep 82 ++lP a v r++k+ l + + + kda e + fi ++++ a+d c++ kr+t+n++d++ al ++ f ++v+p Cotton_A_13877_BGI-A2_v1.0 8 AEELPKAIVRRVVKEKLSEcspdyDFNVHKDAHLAFTESARIFIHYLSATANDICKESKRQTMNAEDVFKALEEIEFSEFVKP 90 5689**********9997622222458******************************************************** PP NF-YB 83 lkvylkkyreleg 95 l++ l+++r+ ++ Cotton_A_13877_BGI-A2_v1.0 91 LRASLAEFRKKNA 103 *********8765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 7.8E-33 | 5 | 151 | IPR009072 | Histone-fold |
Pfam | PF00808 | 5.6E-10 | 10 | 79 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
SuperFamily | SSF47113 | 1.33E-24 | 11 | 119 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 153 aa Download sequence Send to blast |
MEKVVSEAEE LPKAIVRRVV KEKLSECSPD YDFNVHKDAH LAFTESARIF IHYLSATAND 60 ICKESKRQTM NAEDVFKALE EIEFSEFVKP LRASLAEFRK KNAGKKGGAA KENEVKKKRK 120 IEDSSAKNGT KTKQKKEDNH KEEQIEEEQE QDE |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 98 | 119 | RKKNAGKKGGAAKENEVKKKRK |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017606901.1 | 1e-105 | PREDICTED: DNA polymerase epsilon subunit 3-like | ||||
TrEMBL | A0A1U8PI57 | 2e-95 | A0A1U8PI57_GOSHI; DNA polymerase epsilon subunit 3-like | ||||
STRING | Gorai.009G085200.1 | 9e-96 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM12007 | 24 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G27470.1 | 2e-47 | nuclear factor Y, subunit B11 |