PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_13859_BGI-A2_v1.0
Common NameF383_15918
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 399aa    MW: 44732.4 Da    PI: 8.7645
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_13859_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM159.11.8e-4981341128
                         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgy 82 
                                 + pGfrF+Ptd el+++yL+kk+eg +  + evi+e++i+++ePwdLp k+v ++++ew+fF+ r +ky++g++++rat++gy
  Cotton_A_13859_BGI-A2_v1.0   8 MFPGFRFSPTDVELISYYLTKKLEGYEKCV-EVIPEIEICRYEPWDLPdKSVIKSDNEWFFFCARGRKYPNGSQSRRATEQGY 89 
                                 579************************777.99***************777777899************************** PP

                         NAM  83 WkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                                 Wkatgk+++v+s +++++g+k+tLvf++grapkge+t+W+mhey +
  Cotton_A_13859_BGI-A2_v1.0  90 WKATGKERNVKS-GSNVIGTKRTLVFHTGRAPKGERTEWIMHEYCM 134
                                 ************.99*****************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.63E-554149IPR003441NAC domain
PROSITE profilePS5100552.4738150IPR003441NAC domain
PfamPF023657.5E-2510133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0071333Biological Processcellular response to glucose stimulus
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MSIEASSMFP GFRFSPTDVE LISYYLTKKL EGYEKCVEVI PEIEICRYEP WDLPDKSVIK  60
SDNEWFFFCA RGRKYPNGSQ SRRATEQGYW KATGKERNVK SGSNVIGTKR TLVFHTGRAP  120
KGERTEWIMH EYCMNGKSQD SLVVCRLRKN SEFRLNNTSS RAPRTAPQLS PMHDSNCATS  180
NGGADQTGTY KGDKAYLKKG TSSYDSHSIE QFDSASESEQ KLSNEIGPTD SSTPQKDSDA  240
EEDYFAEILK DDIIKLDETP LSARPDISPR IASSSDTGQR RREQPRKENE PHVAHLQGTA  300
NRRIKLRKPK AGDYVVAAKG STELERGVGE MSIEKLTSPK SGDSPKWLLS LFSPSTANLR  360
FIYATFVILT LVALFLTVLL GGFQACKKLQ IYATLLNNL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-41714916164NO APICAL MERISTEM PROTEIN
1ut4_B1e-41714916164NO APICAL MERISTEM PROTEIN
1ut7_A1e-41714916164NO APICAL MERISTEM PROTEIN
1ut7_B1e-41714916164NO APICAL MERISTEM PROTEIN
3swm_A2e-41714919167NAC domain-containing protein 19
3swm_B2e-41714919167NAC domain-containing protein 19
3swm_C2e-41714919167NAC domain-containing protein 19
3swm_D2e-41714919167NAC domain-containing protein 19
3swp_A2e-41714919167NAC domain-containing protein 19
3swp_B2e-41714919167NAC domain-containing protein 19
3swp_C2e-41714919167NAC domain-containing protein 19
3swp_D2e-41714919167NAC domain-containing protein 19
4dul_A1e-41714916164NAC domain-containing protein 19
4dul_B1e-41714916164NAC domain-containing protein 19
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1300307NRRIKLRK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (By similarity). Transcription factor involved in modulation of abscisic acid (ABA) signaling. Attenuates ABA sensitivity and glucose-induced ABA accumulation. Reduces the expression of ABI4 gene. {ECO:0000250|UniProtKB:Q949N0, ECO:0000269|PubMed:24625790}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By glucose (PubMed:24625790). Induced by salt, drought stress and methyl methanesulfonate (MMS) treatment (PubMed:17158162). {ECO:0000269|PubMed:17158162, ECO:0000269|PubMed:24625790}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC8472390.0KC847239.1 Gossypium hirsutum NAC domain protein NAC62 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017604582.10.0PREDICTED: uncharacterized protein LOC108451397
SwissprotQ9LXL93e-97NAC60_ARATH; NAC domain-containing protein 60
TrEMBLA0A0B0Q1Q30.0A0A0B0Q1Q3_GOSAR; NAC domain-containing 89-like protein
STRINGGorai.009G083500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM104532533
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44290.11e-99NAC domain containing protein 60
Publications ? help Back to Top
  1. Liang M, et al.
    Subcellular Distribution of NTL Transcription Factors in Arabidopsis thaliana.
    Traffic, 2015. 16(10): p. 1062-74
    [PMID:26201836]