PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_13784_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 435aa MW: 47849.6 Da PI: 5.65

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_13784_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	45.3	1.5e-14	230	277	2	54
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h + Er RR ++N++++ Lr+++P++ +K++ a+i+ A++YIk+L Cotton_A_13784_BGI-A2_v1.0 230 TTKHFATERERRVHLNDKYQALRTMVPSP-----TKNDRASIVGDAIDYIKEL 277 579************************.....9**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	8.77E-15	228	296	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	14.945	228	277	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.06E-11	229	277	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.2E-12	231	285	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.3E-12	231	277	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.2E-9	234	283	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 435 aa Download sequence Send to blast
MKVYEESGCF DPHSIPDCQE LMGLPGPTPT NCHNSLEDTL NVSSYNHHHH EDASAALDME 60 PHQHYLLDNT TNSHSHLIPY LTQDLPYDQS HWESFNVLPS SSSPEAAAAA ASAAAAAAAA 120 GAYTPTPDLL SLFHLPRCSF LPNPSISFET TPGSPSVVYD PLFHLNLPPQ PPVFRELLQS 180 LPHGYTVPAD DKDAAGVGGL YHDGDNGIIQ FTRDISMAGR AKDRDKAGKT TKHFATERER 240 RVHLNDKYQA LRTMVPSPTK NDRASIVGDA IDYIKELLGT VRELQILVDK KRCGQERSKR 300 LKTEDAASAA DAGDVEIKSL GDTEQCYNTS LRSSWLQRKS KDSEVDVRIV DDEVTIKLVQ 360 RKKINCLLFV SRLLDELQLD LLHVAGGNIG DYYSFLFNTK IYEGSSVYAC AIANKLIDVV 420 DKQYAAAPPT SSTSL

Sequence ? help Back to Top

Protein Sequence Length: 435 aa Download sequence Send to blast

MKVYEESGCF DPHSIPDCQE LMGLPGPTPT NCHNSLEDTL NVSSYNHHHH EDASAALDME  60
PHQHYLLDNT TNSHSHLIPY LTQDLPYDQS HWESFNVLPS SSSPEAAAAA ASAAAAAAAA  120
GAYTPTPDLL SLFHLPRCSF LPNPSISFET TPGSPSVVYD PLFHLNLPPQ PPVFRELLQS  180
LPHGYTVPAD DKDAAGVGGL YHDGDNGIIQ FTRDISMAGR AKDRDKAGKT TKHFATERER  240
RVHLNDKYQA LRTMVPSPTK NDRASIVGDA IDYIKELLGT VRELQILVDK KRCGQERSKR  300
LKTEDAASAA DAGDVEIKSL GDTEQCYNTS LRSSWLQRKS KDSEVDVRIV DDEVTIKLVQ  360
RKKINCLLFV SRLLDELQLD LLHVAGGNIG DYYSFLFNTK IYEGSSVYAC AIANKLIDVV  420
DKQYAAAPPT SSTSL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017645099.1	0.0	PREDICTED: transcription factor bHLH91-like
TrEMBL	A0A1U8PTZ6	0.0	A0A1U8PTZ6_GOSHI; transcription factor bHLH91-like
STRING	Gorai.010G191800.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1355	26	96

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31210.1	4e-95	bHLH family protein