PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_13783_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 429aa MW: 47591.2 Da PI: 5.6507

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_13783_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	44.5	2.7e-14	224	271	2	54
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h + Er RR ++N++++ Lr+++P++ K++ a+i+ A++YIk+L Cotton_A_13783_BGI-A2_v1.0 224 TTKHFATERERRVHLNDKYQALRTMVPSP-----SKNDRASIVDDAIKYIKEL 271 579***********************9.....7**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	9.55E-15	222	290	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.066	222	271	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.50E-11	223	271	No hit	No description
Pfam	PF00010	5.9E-12	225	271	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	8.6E-13	225	279	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.0E-9	228	277	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 429 aa Download sequence Send to blast
MKVYEESGCF DPHSIPDCQE LMGLPGTTPT NCHNSLEDTL NVSSYNHHHH EDASAALDME 60 PHQHYLLDNT TNSHSHLIPY LTQDLPYDQS HWESFNVLPS SSSPEADAAA TAAAGAYTTT 120 PDLLSLFHLP RCSFLPNPSI SFETTPGSPS VVYDPLFHLN LPPQPPVFRE LLQSLPHGYT 180 FPADDKDAAG VGGLYHDGDN GIIQFTRDIS MAGRAKDRDK AGKTTKHFAT ERERRVHLND 240 KYQALRTMVP SPSKNDRASI VDDAIKYIKE LLGTVRELQI LVDKKRCGQE RSKRLKTEDA 300 ASAADAGDVE CKPLGDPDQC YNTSLRSSWL QRKSKDSEVD VRIVDDEVTI KLVQRKKINC 360 LLFVSRLLDE LQLDLQHVAG GNIGDYYSFL FNTKIYEGSS VYACAIANKL IDVVDKQYAA 420 APPTSSTSL

Sequence ? help Back to Top

Protein Sequence Length: 429 aa Download sequence Send to blast

MKVYEESGCF DPHSIPDCQE LMGLPGTTPT NCHNSLEDTL NVSSYNHHHH EDASAALDME  60
PHQHYLLDNT TNSHSHLIPY LTQDLPYDQS HWESFNVLPS SSSPEADAAA TAAAGAYTTT  120
PDLLSLFHLP RCSFLPNPSI SFETTPGSPS VVYDPLFHLN LPPQPPVFRE LLQSLPHGYT  180
FPADDKDAAG VGGLYHDGDN GIIQFTRDIS MAGRAKDRDK AGKTTKHFAT ERERRVHLND  240
KYQALRTMVP SPSKNDRASI VDDAIKYIKE LLGTVRELQI LVDKKRCGQE RSKRLKTEDA  300
ASAADAGDVE CKPLGDPDQC YNTSLRSSWL QRKSKDSEVD VRIVDDEVTI KLVQRKKINC  360
LLFVSRLLDE LQLDLQHVAG GNIGDYYSFL FNTKIYEGSS VYACAIANKL IDVVDKQYAA  420
APPTSSTSL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017645107.1	0.0	PREDICTED: transcription factor bHLH91-like
TrEMBL	A0A2P5XEY8	0.0	A0A2P5XEY8_GOSBA; Uncharacterized protein
STRING	Gorai.010G191900.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1355	26	96

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31210.1	1e-104	bHLH family protein