PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_13762_BGI-A2_v1.0
Common NameF383_00509
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB_related
Protein Properties Length: 93aa    MW: 10732.1 Da    PI: 8.9029
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_13762_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.41.1e-10652347
                                SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
             Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47
                                +WT+   +l+ +a   + ++   +W+  ar +g g+t +++k+++q++
  Cotton_A_13762_BGI-A2_v1.0  6 SWTPKQNKLFENALVIYDKDtpdRWHNLARAVG-GKTVEEVKLHYQNL 52
                                7********************************.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.457257IPR017884SANT domain
SMARTSM007173.4E-8355IPR001005SANT/Myb domain
SuperFamilySSF466893.44E-13561IPR009057Homeodomain-like
CDDcd001672.10E-7653No hitNo description
Gene3DG3DSA:1.10.10.603.5E-4654IPR009057Homeodomain-like
PfamPF002492.4E-7652IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 93 aa     Download sequence    Send to blast
MASASSWTPK QNKLFENALV IYDKDTPDRW HNLARAVGGK TVEEVKLHYQ NLVEDIQQIE  60
SGQVPLPPYK KAGENKGYNF MDGEQRMRNL RLQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A7e-31293693RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017645150.13e-65PREDICTED: protein RADIALIS-like 3
SwissprotQ1A1735e-33RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A0B0PU818e-64A0A0B0PU81_GOSAR; DnaJ subfamily C member 2
STRINGGorai.009G201700.18e-62(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22128198
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.22e-35RAD-like 6