PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_13728_BGI-A2_v1.0
Common NameF383_22285
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 352aa    MW: 38418.6 Da    PI: 4.5246
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_13728_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM43.88.2e-143011823128
                         NAM  23 vegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkkt 105
                                 ++g++l+  +vi++v+ y ++P++Lp         ++f ++++++          tk g Wk++ + +ev+s ++e +g +++
  Cotton_A_13728_BGI-A2_v1.0  30 TSGSPLPN-NVIDHVNPYGIDPKNLPG-------GVWFLINSKEE--------VDTKGGEWKTKEEGREVFS-DSEMIGWRTS 95 
                                 45556666.88**************92.......33444444333........35789**************.999******* PP

                         NAM 106 LvfykgrapkgektdWvmheyrl 128
                                 L +y+gr+p+ +kt+Wvm+ +++
  Cotton_A_13728_BGI-A2_v1.0  96 LEYYEGREPHQRKTEWVMEMFNV 118
                                 ******************99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100521.2718141IPR003441NAC domain
SuperFamilySSF1019412.75E-1927139IPR003441NAC domain
PfamPF023658.5E-633117IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MATPAAAPPP DISFKCTNMD DLFTCFVKIT SGSPLPNNVI DHVNPYGIDP KNLPGGVWFL  60
INSKEEVDTK GGEWKTKEEG REVFSDSEMI GWRTSLEYYE GREPHQRKTE WVMEMFNVTV  120
KRMCDEKEKQ ETSSLCRVSL VPSHEMVENG TGNHLIPHLD LDAHSSSRNP QHEETEALAV  180
AERNEGENLF GMDSGGYDIG FFAGGNFLEL KDLDNPTSPS SSSDNSSAIS ISSGECFDSL  240
AILQELDEQI LEQKDSGKKL DVLAGDKPNE LDTVPATLGG LVSVEGSNSS SEGDESFKTG  300
VSGDPNNQVA KRAKVEEGPS SSRKPSESHG GRRKGGSLGG MLRKKYLCFM PF
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5871382e-57JX587138.1 Gossypium hirsutum clone NBRI_GE21148 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017643719.10.0PREDICTED: protein BEARSKIN1-like
TrEMBLA0A0B0MNL70.0A0A0B0MNL7_GOSAR; NAC domain-containing 29-like protein
STRINGGorai.009G204700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2455534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65910.12e-14NAC domain containing protein 28