PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_13667_BGI-A2_v1.0

Common Name

F383_11524

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

NAC

Protein Properties

Length: 347aa MW: 38932.5 Da PI: 8.3811

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_13667_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	171.7	2.3e-53	15	142	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyW 83 lppGfrFhPtdeelvv+yLkkk+++ +l++ +i+evd+yk++Pw+Lp+k++ +e+ewyfFs+rd+ky++g r+nra++sgyW Cotton_A_13667_BGI-A2_v1.0 15 LPPGFRFHPTDEELVVHYLKKKASSAPLPV-AIIAEVDLYKFDPWELPAKATFGEQEWYFFSPRDRKYPNGVRPNRAATSGYW 96 79**************************.88***********988899************************* PP NAM 84 katgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 katg+dk+vl++ ++++vg+kk Lvfy g+ pkg kt+W+mheyrl Cotton_A_13667_BGI-A2_v1.0 97 KATGTDKPVLTSgGTQKVGVKKALVFYGGKPPKGIKTSWIMHEYRL 142 ******9977788*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	5.89E-65	7	176	IPR003441	NAC domain
PROSITE profile	PS51005	61.781	15	176	IPR003441	NAC domain
Pfam	PF02365	6.5E-28	16	142	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 347 aa Download sequence Send to blast
MESTDSSIGS QQPNLPPGFR FHPTDEELVV HYLKKKASSA PLPVAIIAEV DLYKFDPWEL 60 PAKATFGEQE WYFFSPRDRK YPNGVRPNRA ATSGYWKATG TDKPVLTSGG TQKVGVKKAL 120 VFYGGKPPKG IKTSWIMHEY RLADNKNNNK PPGYDFSNKK NSLRLDDWVL CRIYKKNNTH 180 RPLDQDKDDS MDDMLGSIQP SISIGNQHNN PKFQFASKGT ATSFGTLLEN HEHSLFDGMM 240 GNNSDEGINN GSMSQSMVNP LKRNLPSLFW TDETSTEPQA NKKFHGDSND GSMEKMDGNG 300 SVTTLLSQLR QSPSLQQQQQ QQETMMGSMG DGIYRPPFQL PGLHWYS

Sequence ? help Back to Top

Protein Sequence Length: 347 aa Download sequence Send to blast

MESTDSSIGS QQPNLPPGFR FHPTDEELVV HYLKKKASSA PLPVAIIAEV DLYKFDPWEL  60
PAKATFGEQE WYFFSPRDRK YPNGVRPNRA ATSGYWKATG TDKPVLTSGG TQKVGVKKAL  120
VFYGGKPPKG IKTSWIMHEY RLADNKNNNK PPGYDFSNKK NSLRLDDWVL CRIYKKNNTH  180
RPLDQDKDDS MDDMLGSIQP SISIGNQHNN PKFQFASKGT ATSFGTLLEN HEHSLFDGMM  240
GNNSDEGINN GSMSQSMVNP LKRNLPSLFW TDETSTEPQA NKKFHGDSND GSMEKMDGNG  300
SVTTLLSQLR QSPSLQQQQQ QQETMMGSMG DGIYRPPFQL PGLHWYS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	1e-74	14	178	14	170	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor of the NAC family (Probable). Together with NAC018/NARS2, regulates embryogenesis by regulating the development and degeneration of ovule integuments, a process required for intertissue communication between the embryo and the maternal integument (PubMed:18849494). {ECO:0000269\|PubMed:18849494, ECO:0000305}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By Jasmonic acid (JA). {ECO:0000269\|PubMed:16805732}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC847201	0.0	KC847201.1 Gossypium hirsutum NAC domain protein NAC24 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017603696.1	0.0	PREDICTED: NAC transcription factor 56-like
Swissprot	Q9LD44	1e-124	NAC56_ARATH; NAC transcription factor 56
TrEMBL	A0A0B0MZ55	0.0	A0A0B0MZ55_GOSAR; NAC domain-containing 18-like protein
STRING	Gorai.009G433100.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM190	28	276

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15510.1	1e-116	NAC domain containing protein 2

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]