PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_13494_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 423aa    MW: 47190.4 Da    PI: 6.6806
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_13494_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM109.83.2e-34261472128
                         NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.....kvkaeekewyfFskrdkkyatgkrknratk 79 
                                 ppG+rF+P+d+e++++yL++k+ g +l+  + ikev +y+++P++L +       ++  +e+yfF++rd+kya+g+r+ r   
  Cotton_A_13494_BGI-A2_v1.0  26 PPGYRFKPKDDEIINFYLRPKIFGLPLPP-NRIKEVFLYNYDPQTLTAmsnnaLSNGVGNEYYFFTPRDRKYANGSRPARN-- 105
                                 9*************************999.77**************8434443222245699******************5.. PP

                         NAM  80 sgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                                       tg dk +++ kg+++glkk+Lvfy+g+ pkg+kt+W+mhey l
  Cotton_A_13494_BGI-A2_v1.0 106 ------TGADKLICR-KGKKIGLKKSLVFYQGKPPKGVKTNWLMHEYVL 147
                                 ......899**9999.9999***************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.09E-4423173IPR003441NAC domain
PROSITE profilePS5100539.07725174IPR003441NAC domain
PfamPF023653.2E-1826147IPR003441NAC domain
CDDcd021204.32E-11237351No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    Send to blast
MSDNQVFMDP LMLKEEKDEA CLRSIPPGYR FKPKDDEIIN FYLRPKIFGL PLPPNRIKEV  60
FLYNYDPQTL TAMSNNALSN GVGNEYYFFT PRDRKYANGS RPARNTGADK LICRKGKKIG  120
LKKSLVFYQG KPPKGVKTNW LMHEYVLTDA PIRKRLGNED MRLDDWVLCR VYNNPREKKP  180
KHETLQEGHR EEAQAEADTS AIAPYDGAQM VQQEGHQVDG EDEADTSAIL QYNGTQMGTS  240
INTFDLKGKK YPFIAGAAAP NTSQGYTSDD SRFCGPGTLD ETLVKGKIVF CDYTTYIEGP  300
VEAGAVGVVV RSGRYKDYAF TYGLPLSNLN LNDGRNVLNY VNLTENPTVT IFKTLVEDDQ  360
FAPFVVTFSS RGPNPATPDI LKVQPSVLSF KSLGQKLTLV VTVGAEIGNS MISSSLIWDD  420
GVH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-41131773171Stress-induced transcription factor NAC1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC8472490.0KC847249.1 Gossypium hirsutum NAC domain protein NAC72 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2P5RIC61e-145A0A2P5RIC6_GOSBA; Uncharacterized protein
STRINGGorai.011G271500.11e-136(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17827310
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69490.12e-45NAC-like, activated by AP3/PI