PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Cotton_A_13487_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 95aa MW: 11453.3 Da PI: 6.8217 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 40.1 | 1.1e-12 | 26 | 77 | 2 | 61 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfF 61 ppG+rF+P+d+e++++yL++k+ g +l+ + ikev +y+++P++L +fF Cotton_A_13487_BGI-A2_v1.0 26 PPGYRFKPRDDEIINFYLRPKIFGLPLPP-NRIKEVFLYNYDPQTLTG-------TQFFF 77 9*************************999.77**************72.......12333 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.22E-15 | 22 | 79 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 16.41 | 25 | 95 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.9E-7 | 26 | 78 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 95 aa Download sequence Send to blast |
MSDNQVFMDP LMLKEEKDEA FLRSIPPGYR FKPRDDEIIN FYLRPKIFGL PLPPNRIKEV 60 FLYNYDPQTL TGTQFFFSWL FLLFSLSFSM EKTRQ |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KC847249 | 1e-101 | KC847249.1 Gossypium hirsutum NAC domain protein NAC72 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_017604773.1 | 6e-33 | PREDICTED: uncharacterized protein LOC108451615 | ||||
TrEMBL | W6JBB2 | 6e-41 | W6JBB2_GOSHI; NAC domain protein NAC72 | ||||
STRING | Gorai.011G271500.1 | 2e-31 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G33480.2 | 5e-10 | NAC domain containing protein 41 |