PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_13487_BGI-A2_v1.0
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 95aa    MW: 11453.3 Da    PI: 6.8217
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_13487_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM40.11.1e-122677261
                         NAM  2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfF 61
                                ppG+rF+P+d+e++++yL++k+ g +l+  + ikev +y+++P++L           +fF
  Cotton_A_13487_BGI-A2_v1.0 26 PPGYRFKPRDDEIINFYLRPKIFGLPLPP-NRIKEVFLYNYDPQTLTG-------TQFFF 77
                                9*************************999.77**************72.......12333 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.22E-152279IPR003441NAC domain
PROSITE profilePS5100516.412595IPR003441NAC domain
PfamPF023654.9E-72678IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 95 aa     Download sequence    Send to blast
MSDNQVFMDP LMLKEEKDEA FLRSIPPGYR FKPRDDEIIN FYLRPKIFGL PLPPNRIKEV  60
FLYNYDPQTL TGTQFFFSWL FLLFSLSFSM EKTRQ
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC8472491e-101KC847249.1 Gossypium hirsutum NAC domain protein NAC72 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017604773.16e-33PREDICTED: uncharacterized protein LOC108451615
TrEMBLW6JBB26e-41W6JBB2_GOSHI; NAC domain protein NAC72
STRINGGorai.011G271500.12e-31(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33480.25e-10NAC domain containing protein 41