PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_13481_BGI-A2_v1.0

Common Name

F383_05910

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

TALE

Protein Properties

Length: 644aa MW: 70236.5 Da PI: 7.5165

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_13481_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	29.4	1.4e-09	362	399	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LAk++gLt +qV++WF N R + Cotton_A_13481_BGI-A2_v1.0 362 FEHflHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVR 399 554459******************************88 PP
2	BELL	122.5	1.8e-39	226	297	1	72
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 erqe+q+kkakL+s+l+eVd+rY+qy++q+q+vis Fe+ ag+gsak Yt+lAlk+iS++FrcLkdai++qi Cotton_A_13481_BGI-A2_v1.0 226 ERQEIQMKKAKLISMLDEVDQRYRQYHHQMQIVISTFEQTAGIGSAKTYTALALKTISKQFRCLKDAIIGQI 297 79*********************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	5.1E-62	148	295	IPR006563	POX domain
Pfam	PF07526	8.3E-50	153	293	IPR006563	POX domain
PROSITE profile	PS50071	12.195	340	403	IPR001356	Homeobox domain
CDD	cd00086	3.60E-12	343	404	No hit	No description
SMART	SM00389	5.3E-9	343	407	IPR001356	Homeobox domain
SuperFamily	SSF46689	8.13E-17	344	409	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	9.1E-29	346	409	IPR009057	Homeodomain-like
Pfam	PF05920	2.6E-18	360	399	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 644 aa Download sequence Send to blast
MAAYFHGNPE IQAADDLQTL VLMNPAYVHY SNTPPPPPPS NNLVFLNSLS PNAPSSHSQQ 60 LVGIPLPAVT SRSNQDAISS LHGLVQRLHY NSYNPIDPSG APRDTPRAQQ GLSLTLSSQH 120 QPSNYGSQPQ AVSGGSASSC SAVTNGVSGI QSVLLSSKYL RAAQELLDEV VNVDNTGFTK 180 TEMAKKGCGN DSNRSKGTGE LSAAAGDGSG GEDAVGKRRT ELSTAERQEI QMKKAKLISM 240 LDEVDQRYRQ YHHQMQIVIS TFEQTAGIGS AKTYTALALK TISKQFRCLK DAIIGQIRAV 300 NKSLGEEDRL GGKTEGSGLK FVDHQLRQQR ALQQLGMIQH NAWRPQRGLP ERSVSVLRAW 360 LFEHFLHPYP KDSDKHMLAK QTGLTRSQVS NWFINARVRL WKPMVEEMYL EEIKEQEQNN 420 EDSASKSTGP TPAKNQAKSL SSSKQDNSAN QNASSMSISM ASTSPLAGNA QNQSGYSFIG 480 SSELEGITQG SPKKPRSTEV LLQSPIDMDT KQREAADDVS IKFGKEGYSF MGTDTNFIGG 540 FGQYPIAEMA RFDAEHFAPR FPGNGVSLTL GLPHCENLSL SATHQTFLPN QTLQMGRRLD 600 IGEPNEYGAI NPSTPHSSAA YEIENIDVQN RKRFAAQLLP DFVA

Sequence ? help Back to Top

Protein Sequence Length: 644 aa Download sequence Send to blast

MAAYFHGNPE IQAADDLQTL VLMNPAYVHY SNTPPPPPPS NNLVFLNSLS PNAPSSHSQQ  60
LVGIPLPAVT SRSNQDAISS LHGLVQRLHY NSYNPIDPSG APRDTPRAQQ GLSLTLSSQH  120
QPSNYGSQPQ AVSGGSASSC SAVTNGVSGI QSVLLSSKYL RAAQELLDEV VNVDNTGFTK  180
TEMAKKGCGN DSNRSKGTGE LSAAAGDGSG GEDAVGKRRT ELSTAERQEI QMKKAKLISM  240
LDEVDQRYRQ YHHQMQIVIS TFEQTAGIGS AKTYTALALK TISKQFRCLK DAIIGQIRAV  300
NKSLGEEDRL GGKTEGSGLK FVDHQLRQQR ALQQLGMIQH NAWRPQRGLP ERSVSVLRAW  360
LFEHFLHPYP KDSDKHMLAK QTGLTRSQVS NWFINARVRL WKPMVEEMYL EEIKEQEQNN  420
EDSASKSTGP TPAKNQAKSL SSSKQDNSAN QNASSMSISM ASTSPLAGNA QNQSGYSFIG  480
SSELEGITQG SPKKPRSTEV LLQSPIDMDT KQREAADDVS IKFGKEGYSF MGTDTNFIGG  540
FGQYPIAEMA RFDAEHFAPR FPGNGVSLTL GLPHCENLSL SATHQTFLPN QTLQMGRRLD  600
IGEPNEYGAI NPSTPHSSAA YEIENIDVQN RKRFAAQLLP DFVA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3k2a_A	4e-16	349	407	5	63	Homeobox protein Meis2
3k2a_B	4e-16	349	407	5	63	Homeobox protein Meis2
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017608245.1	0.0	PREDICTED: BEL1-like homeodomain protein 1
Refseq	XP_017608246.1	0.0	PREDICTED: BEL1-like homeodomain protein 1
Refseq	XP_017608247.1	0.0	PREDICTED: BEL1-like homeodomain protein 1
Refseq	XP_017608248.1	0.0	PREDICTED: BEL1-like homeodomain protein 1
Refseq	XP_017608249.1	0.0	PREDICTED: BEL1-like homeodomain protein 1
Swissprot	Q9SJ56	0.0	BLH1_ARATH; BEL1-like homeodomain protein 1
TrEMBL	A0A0B0NJ51	0.0	A0A0B0NJ51_GOSAR; BEL1-like homeodomain protein 1
STRING	Gorai.006G149100.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5008	26	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35940.3	1e-167	BEL1-like homeodomain 1

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]