PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_13440_BGI-A2_v1.0
Common NameF383_23443
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRF
Protein Properties Length: 403aa    MW: 43935.8 Da    PI: 8.2747
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_13440_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC81.47.9e-26146189144
                         WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                                 d+epgrCrRtDGKkWRCsr+v++g+k+CErH+hrgr+rsrk++e
  Cotton_A_13440_BGI-A2_v1.0 146 DPEPGRCRRTDGKKWRCSRDVVPGQKYCERHVHRGRNRSRKPVE 189
                                 79***************************************997 PP
2QLQ51.33.5e-1881117137
                         QLQ   1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                                 s+F+ aQ+q+L+ Q+l+y+y++a++ vPpeLl +i+k
  Cotton_A_13440_BGI-A2_v1.0  81 SYFSLAQWQELELQALIYRYMLAGAAVPPELLHPIKK 117
                                 79*********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009512.8E-1081117IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166620.13482117IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088803.9E-1382115IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.655146190IPR014977WRC domain
PfamPF088793.8E-22147189IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MDLHLKQWRN QHESEQQPSA KIPKLLLDLD AHHHHHHHPQ QQQQHASSEP SALPLFVSES  60
NSKISGSLSA PLPDSNSRMG SYFSLAQWQE LELQALIYRY MLAGAAVPPE LLHPIKKSLL  120
YSSSYFLHHY QPALLQSGYW GRAAMDPEPG RCRRTDGKKW RCSRDVVPGQ KYCERHVHRG  180
RNRSRKPVEM PTSSSTAAEA NNSHVSVTAR FGGGGSGCGA VKASSPMTAS TLAAVANGPN  240
NFGLSRPSPP VDLLQLNHGS SESKTEPKGL FEAQNEVDDR SDGHILRHFF DDWPRTLQDP  300
DNNGTNASPM NSAPCLTISM PGNSSSDVSL KLSTGNGDSR REHHQQPPLN WAMGGWAASN  360
QVASMGGPLA EALRSSSTSN SSPTSVLHQL PKGSTSEISY IST
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: microRNA 396 (miR396a or miR396b) negatively regulates growth-regulating factors (GRF1-4 and GRF7-9). {ECO:0000269|PubMed:15200956, ECO:0000269|PubMed:19453503, ECO:0000269|PubMed:20023165}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4779841e-49AM477984.2 Vitis vinifera contig VV78X100436.13, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017611875.10.0PREDICTED: growth-regulating factor 3-like isoform X2
SwissprotQ8L8A72e-82GRF4_ARATH; Growth-regulating factor 4
TrEMBLA0A0B0MN900.0A0A0B0MN90_GOSAR; Uncharacterized protein
STRINGEOY081480.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19262667
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G52910.15e-66growth-regulating factor 4
Publications ? help Back to Top
  1. Kuijt SJ, et al.
    Interaction between the GROWTH-REGULATING FACTOR and KNOTTED1-LIKE HOMEOBOX families of transcription factors.
    Plant Physiol., 2014. 164(4): p. 1952-66
    [PMID:24532604]
  2. Cao Y,Han Y,Jin Q,Lin Y,Cai Y
    Comparative Genomic Analysis of the GRF Genes in Chinese Pear (Pyrus bretschneideri Rehd), Poplar (Populous), Grape (Vitis vinifera), Arabidopsis and Rice (Oryza sativa).
    Front Plant Sci, 2016. 7: p. 1750
    [PMID:27933074]