PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_13408_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Nin-like

Protein Properties

Length: 297aa MW: 34316.2 Da PI: 6.0008

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_13408_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	81.9	6.5e-26	139	188	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 k +s +++s+yF++pi +AAkeL+v+lT+LK++CR++GI+RWPhRk++sl Cotton_A_13408_BGI-A2_v1.0 139 KLLSRKVISQYFYMPIIQAAKELNVGLTLLKKRCRELGIRRWPHRKLTSL 188 67899******************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.53	124	208	IPR003035	RWP-RK domain
Pfam	PF02042	5.0E-21	141	188	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 297 aa Download sequence Send to blast
MANQCPLNGC WFKSSEMIAK EEEHYSSPFP PRLPLDSSTT VYCNPMDWQF PIEQGFYDEV 60 PLMSTFSTDP LYASLDIEQT STQDGYDENG NGFWDELGLL FEPCNKQPML KDEDINGEEV 120 MKKERVSSKR CKEDQRKAKL LSRKVISQYF YMPIIQAAKE LNVGLTLLKK RCRELGIRRW 180 PHRKLTSLRT LINNVQELEE GEERESKVRE AIEVLERERK MLEEMPDMDL EDKTKRLRQA 240 CFKANYKKRK LVPPSIMNQS PSSTGAVGSR ASDLDLITRA NCRRGLSDSF SSTISMI

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX580452	2e-99	JX580452.1 Gossypium hirsutum clone NBRI_GE12885 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017635951.1	0.0	PREDICTED: protein RKD1-like
TrEMBL	A0A1U8M5M6	0.0	A0A1U8M5M6_GOSHI; protein RKD1-like
STRING	Gorai.008G193400.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12180	19	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66990.1	2e-47	RWP-RK domain-containing protein