PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_13400_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

M-type_MADS

Protein Properties

Length: 324aa MW: 36545.4 Da PI: 7.0175

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_13400_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	74.9	6.2e-24	9	53	1	45
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 kr e++snrqvt+skRr+gilKKA+ELS+LCd+ + +++fs+tgk Cotton_A_13400_BGI-A2_v1.0 9 KRLESYSNRQVTYSKRRTGILKKAKELSILCDIHIILLMFSPTGK 53 689****************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	1.9E-30	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	25.077	1	61	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.44E-25	2	88	IPR002100	Transcription factor, MADS-box
CDD	cd00266	3.74E-26	2	81	No hit	No description
PRINTS	PR00404	1.1E-18	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	2.9E-20	11	56	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.1E-18	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.1E-18	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 324 aa Download sequence Send to blast
MGRVKLKIKR LESYSNRQVT YSKRRTGILK KAKELSILCD IHIILLMFSP TGKPTLFHGE 60 RSTIEEVIAK FAQLTPQERA KSYWNNPDKI DNIEHLRQME DSLRESIERI RIHKENYGKH 120 HLLPLESTSQ FQNAMPLPVM IGGVQEAQPV TWLPNNDNQQ MLLHNESNFL PNLDTECPTD 180 GSLAGYSGFF VPGNQTDIGN SVQVDNTIQE SNVLNELGNN AFLNSQLGKQ YLYPQFSASN 240 LQDDEKLKSE MVGNLQGGPG VYQVITDFEA PRTMSNGGHQ AWITSSGPCG IAMFDGNSYH 300 QELNLPAKSL IQIVVYRSKQ NRLL

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that forms a heterodimer with the MADS-box protein AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269\|PubMed:19211705}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX577441	5e-45	JX577441.1 Gossypium hirsutum clone NBRI_GE9263 microsatellite sequence.
GenBank	KU896425	5e-45	KU896425.1 Hibiscus cannabinus microsatellite HC_ES_49_GAG sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016722133.1	0.0	PREDICTED: agamous-like MADS-box protein AGL65 isoform X1
Refseq	XP_016722134.1	0.0	PREDICTED: agamous-like MADS-box protein AGL65 isoform X1
Refseq	XP_016722135.1	0.0	PREDICTED: agamous-like MADS-box protein AGL65 isoform X1
Swissprot	Q7X9I0	3e-63	AGL65_ARATH; Agamous-like MADS-box protein AGL65
TrEMBL	A0A1U8M5U5	0.0	A0A1U8M5U5_GOSHI; agamous-like MADS-box protein AGL65 isoform X1
STRING	Gorai.008G194100.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5933	25	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18750.1	1e-65	AGAMOUS-like 65

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]