PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_13266_BGI-A2_v1.0
Common NameF383_21791
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family SRS
Protein Properties Length: 344aa    MW: 35822.6 Da    PI: 8.2848
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_13266_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702214.72.2e-661322913153
                      DUF702   3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.aeaaskrkrelkskkqs 84 
                                 s +++CqdCGnq+kkdC+h+RCRtCCksrgfdC thvkstWvpaa+rrerq ++aa+++  a s+ +++ +k++r   +++++
  Cotton_A_13266_BGI-A2_v1.0 132 SSGTTCQDCGNQSKKDCSHRRCRTCCKSRGFDCPTHVKSTWVPAARRRERQLMAAAPTTACAGSSgSTSGAKKPRLV-TSQTT 213
                                 56679**********************************************99999988887777466667777765.66677 PP

                      DUF702  85 alsstklssaeskkeletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153
                                 ++ +t++s++++ ++l+tss          lP +v+++avf+cvrv++v+dge+e+aYq++v+igGhvfkG+LydqG+e
  Cotton_A_13266_BGI-A2_v1.0 214 TTPHTSTSNTTP-RSLDTSSshqdagfketLPGQVRAPAVFKCVRVTAVEDGEDEYAYQAVVKIGGHVFKGFLYDQGVE 291
                                 777777777765.56666666899*****************************************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051425.4E-62134291IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016232.1E-26136178IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016245.4E-30243290IPR006511Lateral Root Primordium type 1, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0048364Biological Processroot development
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MGMVGLRDFV VVAPASFNHH HHHHHHHAQD PIIGNDQING QNAATALGVG VGVFPLLTAS  60
PCLAPQNMED SDLVNNSGRN KLSGMQLWQN QTSPNYLKKP SSILDNNNSS MNLIQTSGGG  120
GMGGGSGGSG TSSGTTCQDC GNQSKKDCSH RRCRTCCKSR GFDCPTHVKS TWVPAARRRE  180
RQLMAAAPTT ACAGSSGSTS GAKKPRLVTS QTTTTPHTST SNTTPRSLDT SSSHQDAGFK  240
ETLPGQVRAP AVFKCVRVTA VEDGEDEYAY QAVVKIGGHV FKGFLYDQGV EGRDGFPNIS  300
ELHLGGGSGT NGGSSSSPVL DPSQVYAATG GGLLGGSTYG NPIN
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18835563}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269|PubMed:18835563}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017642229.10.0PREDICTED: protein LATERAL ROOT PRIMORDIUM 1-like
SwissprotQ94CK91e-96LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1
TrEMBLA0A0B0MGZ40.0A0A0B0MGZ4_GOSAR; tRNA-dihydrouridine(16/17) synthase [NAD (P)(+)]-like protein
STRINGGorai.001G134100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58832646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12330.21e-81Lateral root primordium (LRP) protein-related
Publications ? help Back to Top
  1. Estornell LH,Landberg K,Cierlik I,Sundberg E
    SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 150
    [PMID:29491878]